View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_high_26 (Length: 246)
Name: NF10865A_high_26
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32400718 - 32400936
Alignment:
| Q |
1 |
atacaggtaggtaattgtttatcaacttccttctaacctaaatagaatgcaattaatacacaaagcaaaaggagaaagggaccattttacagcatctacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32400718 |
atacaggtaggtaattgtttatcaacttccttctaacctaaatagaatgcaattaatacacaaagcaaaaggagaaagggaccattttacagcatctacg |
32400817 |
T |
|
| Q |
101 |
tttagattagaaccnnnnnnnttgttactagtagtactcaagaacagcacacaaaaaacaaaacaaagacttttgttttgttttgtccaattattagaca |
200 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
32400818 |
tttagattagatccaaaaaaattgttactagtagtactcaagaacagcacacaaaaaacaaaacaaagac-----ttttgttttgtccaattattagata |
32400912 |
T |
|
| Q |
201 |
ctgtgaatgttaggtgattccaac |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32400913 |
ctgtgaatgttaggtgattccaac |
32400936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University