View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_high_3 (Length: 468)
Name: NF10865A_high_3
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 56069291 - 56069644
Alignment:
| Q |
5 |
gactgagatgaagcaagccatgtatacaaaaagaataataaattatataatggattgcaa-------------ttgacctttattatggatggatgttgc |
91 |
Q |
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| T |
56069291 |
gactgatacgaagcaagccatgtatacaaaaagaataataaattatataatggattgcaacctataaggtgcattgacctttattatggatggatgttgc |
56069390 |
T |
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| Q |
92 |
attctcgcaaatacacagaatcataatgaacgtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatggtttcatatttccattata |
191 |
Q |
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| T |
56069391 |
attctcgcaaatacacagaatcataatgaatgtacttcgtccaataaccttgaaacttttgaatacttatctcgagccatggtttcatatttccattata |
56069490 |
T |
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| Q |
192 |
----gtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagta |
287 |
Q |
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| T |
56069491 |
tatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagta |
56069590 |
T |
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| Q |
288 |
tgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataattgt |
341 |
Q |
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| T |
56069591 |
tgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataattgt |
56069644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 342 - 468
Target Start/End: Original strand, 56069678 - 56069800
Alignment:
| Q |
342 |
ggaaacatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgt |
441 |
Q |
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| T |
56069678 |
ggaaaaatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaat----taaagtgt |
56069773 |
T |
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| Q |
442 |
gcttaccagtttctgccatttgtggta |
468 |
Q |
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| T |
56069774 |
gcttaccagtttctgccatttgtggta |
56069800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 73 - 341
Target Start/End: Complemental strand, 38398961 - 38398695
Alignment:
| Q |
73 |
tattatggatggatgttgcattctcgcaaatacacagaatcataatgaacgtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatg |
172 |
Q |
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| T |
38398961 |
tattattgattgatattgcattctcgcaaatactcactctcataatcaacatacttcgtccaataacctttaaacttcggtatacttatctccagccacg |
38398862 |
T |
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| Q |
173 |
gtttcatatttccattatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaagacccaagacgtgccaggatcgg |
272 |
Q |
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| T |
38398861 |
gtttcaagtttccgttatagtga--attacagcagccctttcaatatctttttggttgacattggggttgtagccaagacctaagacatgccaagatcgg |
38398764 |
T |
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| Q |
273 |
ttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataattgt |
341 |
Q |
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| T |
38398763 |
ttcagcgggaacgtgcgtttccagaatgttataagaccaggtggcagtgttcctaacttccatagttgt |
38398695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 38398594 - 38398518
Alignment:
| Q |
387 |
agatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgtgcttaccagtttctgccatttgtggta |
468 |
Q |
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| T |
38398594 |
agatgcatttcactcaattttgtgatgttttggaaaagtagat----taaagtgt-cttaccagcttctgccaattgtggta |
38398518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 334
Target Start/End: Complemental strand, 10171266 - 10171013
Alignment:
| Q |
79 |
ggatggatgttgcattctcgcaaatacacagaatcataatgaacgtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatggtttca |
178 |
Q |
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|||| ||||||||||||||||||||| ||| || ||| | || ||||| ||||| |||||| |||||| ||||||||||||| | |||||| |||| |
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| T |
10171266 |
ggattgatgttgcattctcgcaaatagacatgattatagttgacatactttgtccagtaacctctaaacttgggaatacttatctccaaccatggcttca |
10171167 |
T |
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| Q |
179 |
tatttccattatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaagacccaagacgtgccaggatcggttcagc |
278 |
Q |
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| T |
10171166 |
tgttcccattgtagtgcata--acagcagcccgatcaatatctttttggttgacgttgggattgtagccaagacccaacacatgccacgctttgttcagt |
10171069 |
T |
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| Q |
279 |
gggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttcca |
334 |
Q |
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| T |
10171068 |
gggaaagtgcgtttccagaaggttatgagacctggtggcagtgttcctaacttcca |
10171013 |
T |
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