View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_high_9 (Length: 382)
Name: NF10865A_high_9
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 52850860 - 52851234
Alignment:
| Q |
8 |
aaacacagaagtatacaattggcatggctcatatggacggatacaagagatttgaaccacataagagaaagtgctgcgcttgttgcaaagttggttggtt |
107 |
Q |
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| T |
52850860 |
aaacacagaagtatacaattggcatggctcatatggacggatacaagagatttgaaccacataagagaaagtgctgcgcttgttgcaaagttggttggtt |
52850959 |
T |
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| Q |
108 |
ttattaacacggccgagacctcaaagaaaacttttggatttggcttcttaagccgacgtaagagcataaaatcccttagttggaaggacacaatgtctac |
207 |
Q |
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| T |
52850960 |
ttattaacacgggtgagacctcaaagaaaacttttggatttggcttcttaagccgacgtaagagcataaaatcccttagttggaaggacacaatgtctac |
52851059 |
T |
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| Q |
208 |
cctttaatagagctagcttgaggggggaaaaaggggacatttcagcaattcaaactcaggtcggttaaattagtgttgcagtttacttctacttttatct |
307 |
Q |
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| T |
52851060 |
cctttaatagagctagcttga-gggggaaaaaggggacatttcagcaatttaaattcaggtcggttaaattagtgttgcagtttacttctacttttatct |
52851158 |
T |
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| Q |
308 |
tctaggtttcgttctatcattg-nnnnnnntgtaagatgatagtgattaaattaaagtaaatgcttcctacctata |
382 |
Q |
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| T |
52851159 |
tctaggtttcgttctatcattgaaaagaaatgtaagatgatagtgattaaattaaagtaaatgcttcctacctata |
52851234 |
T |
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