View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_104 (Length: 338)
Name: NF10865A_low_104
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_104 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 31567637 - 31567426
Alignment:
| Q |
18 |
aaccaaatccgattttgggatgatatatggattggaaaaattaaacttcgacaatcatttcctccacacgattctataatctctgtcagaacaaaa-tag |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
31567637 |
aaccaaatccgattatgggatgatatatggattggaaaaattacacttcgacaatcttttcctccacacgattatataatctctgtcagaacaaaaatag |
31567538 |
T |
|
| Q |
117 |
aatcgtgcggaggaaatggggcaatgacacgacttagtcttcatgtatcctcgatacagataaaatgtgtccttaatgaaaggctgctctggaagagaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31567537 |
aatcgtgcggaggaaatggggcaatgacacaacttagtcttcatgtatcctcgatacagataaaatgtgtccttaatgaaaggctgctctagaagagaaa |
31567438 |
T |
|
| Q |
217 |
gctctcctaacc |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31567437 |
gctctcctaacc |
31567426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 33292846 - 33292995
Alignment:
| Q |
186 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
285 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33292846 |
tccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattcttccctcaacaattttctctcttatgttctcgggtttcaaagcaa |
33292945 |
T |
|
| Q |
286 |
ggtcttctctctgcatctcaagatccttttctttcgtcacaatggttttg |
335 |
Q |
| |
|
|||||||||| ||||||| ||| || ||||| |||| |||||||||||| |
|
|
| T |
33292946 |
ggtcttctctttgcatcttaagttctttttccttcgcgacaatggttttg |
33292995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 186 - 338
Target Start/End: Original strand, 33414393 - 33414545
Alignment:
| Q |
186 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
285 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
33414393 |
tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaattttctctctaatgttctcgggttttgaagcaa |
33414492 |
T |
|
| Q |
286 |
ggtcttctctctgcatctcaagatccttttctttcgtcacaatggttttggga |
338 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||||||||||| |||| |||| |
|
|
| T |
33414493 |
ggtcttctctttgcatctcaagttctttttccttcgtcacaatagtttcggga |
33414545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 186 - 338
Target Start/End: Original strand, 33269365 - 33269518
Alignment:
| Q |
186 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctca-acaattttctctcttatgttctcgggtttcgaagca |
284 |
Q |
| |
|
|||||||| ||||||| |||| |||||| ||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
33269365 |
tccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctcagacaattttctctctaatgttctcgggtttcaaagca |
33269464 |
T |
|
| Q |
285 |
aggtcttctctctgcatctcaagatccttttctttcgtcacaatggttttggga |
338 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
33269465 |
aggtcttctctttgcatctcaagatctttttccttcgtcacaatagtttcggga |
33269518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 33383850 - 33383997
Alignment:
| Q |
186 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
285 |
Q |
| |
|
||||||||||||||||||| | ||||| || ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
33383850 |
tccttaatgaaaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaattttctctgttatgttctcgggtttcaaagcaa |
33383949 |
T |
|
| Q |
286 |
ggtcttctctctgcatctcaagatccttttctttcgtcacaatggttt |
333 |
Q |
| |
|
||||||||||||||| |||||| || ||||| |||||||||||||||| |
|
|
| T |
33383950 |
ggtcttctctctgcaactcaagttctttttccttcgtcacaatggttt |
33383997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 31565228 - 31565104
Alignment:
| Q |
186 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
285 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||| ||| ||||||| |
|
|
| T |
31565228 |
tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaattttttctcttctgttctcggcttttgaagcaa |
31565129 |
T |
|
| Q |
286 |
ggtcttctctctgcatctcaagatc |
310 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
31565128 |
ggtcttctctctgcattgcaagatc |
31565104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 33394934 - 33395024
Alignment:
| Q |
243 |
ccctcaacaattttctctcttatgttctcgggtttcgaagcaaggtcttctctctgcatctcaagatccttttctttcgtcacaatggttt |
333 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||||| || || ||||| |||||| ||||||||| |
|
|
| T |
33394934 |
ccctcaactattttctctcttatgttcccgggtttcaaagcaaggtcttctctctacatctcgagttctttttccttcgtcgcaatggttt |
33395024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 186 - 338
Target Start/End: Complemental strand, 17445813 - 17445658
Alignment:
| Q |
186 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
285 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||| || |
|
|
| T |
17445813 |
tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaattttctctcttatattctcgggtttcgaagaaa |
17445714 |
T |
|
| Q |
286 |
ggtcttctct---ctgcatctcaagatccttttctttcgtcacaatggttttggga |
338 |
Q |
| |
|
||||||| || |||||||||||| || ||||| ||| |||||||||||| |||| |
|
|
| T |
17445713 |
ggtcttccctctgctgcatctcaagttctttttccttcttcacaatggtttcggga |
17445658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University