View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_107 (Length: 335)

Name: NF10865A_low_107
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_107
NF10865A_low_107
[»] chr2 (13 HSPs)
chr2 (148-328)||(39911436-39911616)
chr2 (44-147)||(39903134-39903237)
chr2 (3-147)||(39806235-39806388)
chr2 (235-328)||(39902976-39903069)
chr2 (149-233)||(39815424-39815508)
chr2 (84-147)||(39911663-39911726)
chr2 (148-214)||(39922648-39922714)
chr2 (4-147)||(39922761-39922913)
chr2 (257-328)||(39815354-39815425)
chr2 (257-328)||(39806069-39806140)
chr2 (268-328)||(39922577-39922637)
chr2 (3-46)||(39815618-39815661)
chr2 (105-147)||(39815561-39815603)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 39911616 - 39911436
Alignment:
Q  148 aataagactcacattataatagaaattttatgagaaaagaataatataaatactctctcatcttctccatccctattctcttgctcttttgctttatttt 247  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||  |||||||||||||| |||| ||||||||    
T  39911616 aataagactcccattataatagaaattttatgagaggagaataatataaatactctctcatcttctatatttctattctcttgctcctttggtttatttt 39911517  T
Q  248 ctaacactttccatttttaacaaatgaaaaattattagttttcacatcatgaacccatcaacccttgtgcatatgaatcat 328  Q
    |||||||||| ||||||| | ||||||||||||||||||||||| ||||||  ||||||| || |||||||||||||||||    
T  39911516 ctaacacttttcatttttgaaaaatgaaaaattattagttttcaaatcatgcgcccatcatccattgtgcatatgaatcat 39911436  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 39903237 - 39903134
Alignment:
Q  44 gacttcttcctcactgtaaccgttaaaaatgagcctcgtttttcatttcattcattgcataatcaaaatgaacacataatgtgagcctctagattcaaca 143  Q
    ||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39903237 gacttcttcctcactgtaactagtaaaaatgagcctcgtgtttcatttcattcattgcataatcaaaatgaacacataatgtgagcctcttgattcaaca 39903138  T
Q  144 actc 147  Q
    ||||    
T  39903137 actc 39903134  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 39806388 - 39806235
Alignment:
Q  3 tatcatagacaatatgctaatgatcatgatcatgaatcatagac---------ttcttcctcactgtaaccgttaaaaatgagcctcgtttttcatttca 93  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||         ||||||||||||||| | | ||||| ||||||| || |||| |||||    
T  39806388 tatcataaacattatgttaatgatcatgatcatgaatcatagacaacatggatttcttcctcactgtagctgataaaattgagccttgtgtttcgtttca 39806289  T
Q  94 ttcattgcataatcaaaatgaacacataatgtgagcctctagattcaacaactc 147  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39806288 ttaattgcataatcaaaatgaacacataatatgagcctctagattcaacaactc 39806235  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 39903069 - 39902976
Alignment:
Q  235 tttgctttattttctaacactttccatttttaacaaatgaaaaattattagttttcacatcatgaacccatcaacccttgtgcatatgaatcat 328  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |||| | |||||||||||||    
T  39903069 tttggtttattttctaacactttccatttttaagaaatgaaaaattattagttttcacatcaagcacccatcatccctcgagcatatgaatcat 39902976  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 39815508 - 39815424
Alignment:
Q  149 ataagactcacattataatagaaattttatgagaaaagaataatataaatactctctcatcttctccatccctattctcttgctc 233  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||    
T  39815508 ataagactcacattgtaatagaaattctatgagaaaagaataatataaataatgtctcatcttctctatctctattctcttgctc 39815424  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 39911726 - 39911663
Alignment:
Q  84 tttcatttcattcattgcataatcaaaatgaacacataatgtgagcctctagattcaacaactc 147  Q
    ||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  39911726 tttcatttcattcattgcataatcaaaatcaacacataatgatagcctctagattcaacaactc 39911663  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 39922714 - 39922648
Alignment:
Q  148 aataagactcacattataatagaaattttatgagaaaagaataatataaatactctctcatcttctc 214  Q
    ||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  39922714 aataagactcacattgtaatagaaattctatgagaagagaatattataaatactctctcatcttctc 39922648  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 39922913 - 39922761
Alignment:
Q  4 atcatagacaatatgctaatgatcatgatcatgaatcatagac---------ttcttcctcactgtaaccgttaaaaatgagcctcgtttttcatttcat 94  Q
    |||||| |||||||||||||||||||| | ||||| |||||||         ||||||||||||||| | | ||||| |||| ||||| |||||||  ||    
T  39922913 atcataaacaatatgctaatgatcatgctaatgaaccatagacaacatggacttcttcctcactgtagctgataaaagtgagtctcgtgtttcattatat 39922814  T
Q  95 tcattgcataatcaaaatgaacacataatgtgagcctctagattcaacaactc 147  Q
    ||||| |||||||| ||||||| |||||| ||||||||||||| ||| |||||    
T  39922813 tcattacataatcagaatgaactcataatatgagcctctagatacaagaactc 39922761  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 39815425 - 39815354
Alignment:
Q  257 tccatttttaacaaatgaaaaattattagttttcacatcatgaacccatcaacccttgtgcatatgaatcat 328  Q
    |||||||||| |||||| |||||||||||||||||||||| | |||||| |||||||||| |||||||||||    
T  39815425 tccatttttagcaaatgcaaaattattagttttcacatcaagcacccataaacccttgtgtatatgaatcat 39815354  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 39806140 - 39806069
Alignment:
Q  257 tccatttttaacaaatgaaaaattattagttttcacatcatgaacccatcaacccttgtgcatatgaatcat 328  Q
    |||||||||| |||| | |||| || |||||||||||||| | |||||||||||||||||||||||||||||    
T  39806140 tccatttttagcaaaagcaaaactaatagttttcacatcaagcacccatcaacccttgtgcatatgaatcat 39806069  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 39922637 - 39922577
Alignment:
Q  268 caaatgaaaaattattagttttcacatcatgaacccatcaacccttgtgcatatgaatcat 328  Q
    |||||| ||||||||| |||||||||||| | |||||||||||| |||| |||||||||||    
T  39922637 caaatgcaaaattattggttttcacatcaagcacccatcaacccatgtgtatatgaatcat 39922577  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 39815661 - 39815618
Alignment:
Q  3 tatcatagacaatatgctaatgatcatgatcatgaatcatagac 46  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||    
T  39815661 tatcataaacaatatgctaataatcgtgatcatgaatcatagac 39815618  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 39815603 - 39815561
Alignment:
Q  105 atcaaaatgaacacataatgtgagcctctagattcaacaactc 147  Q
    |||||||||| |||||||||||| |||||||||||| ||||||    
T  39815603 atcaaaatgagcacataatgtgaacctctagattcagcaactc 39815561  T

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