View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_113 (Length: 331)
Name: NF10865A_low_113
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_113 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 78 - 331
Target Start/End: Complemental strand, 44734521 - 44734270
Alignment:
| Q |
78 |
ccatttaggaataaaatagatccctctcaatgtaaatgtgttaaaaggatagaaagaaagaatatgctaggtggggtcattcattactcattagtccnnn |
177 |
Q |
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| T |
44734521 |
ccatttaggaataaaatagatccctctcaatgtaaatgtgttaaaaggatagaaagaaagaatatgctaggtggggtcatt----actcattagtccttt |
44734426 |
T |
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| Q |
178 |
nnnnnnnnngtgtgaaaagggtccttaagtcgtttgtgatggctttaaatagcagtggcattcccgcgacaacaacagtaccttgaacacaaacaaaaac |
277 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44734425 |
tttgtttttgtgtgaaaagggtccttaagtcgtttgtgatgactttaaatagcagtggcattcccgcgacaacaacagaaccttgaacacaaacaaaaac |
44734326 |
T |
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| Q |
278 |
caaaagaaagagaaccaaattaaccttgtt--gtgtcagttgaattttcaagtgtt |
331 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
44734325 |
caaaagaaagagaaccaaattaaccttgttgtgtgtcagttgagttttcaagtgtt |
44734270 |
T |
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