View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_114 (Length: 329)

Name: NF10865A_low_114
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_114
NF10865A_low_114
[»] chr4 (5 HSPs)
chr4 (175-308)||(24685855-24685988)
chr4 (16-114)||(24686060-24686158)
chr4 (27-114)||(24127132-24127219)
chr4 (175-251)||(24126983-24127059)
chr4 (248-310)||(24126885-24126947)
[»] chr1 (2 HSPs)
chr1 (177-308)||(49383590-49383721)
chr1 (16-114)||(49383418-49383516)
[»] chr6 (3 HSPs)
chr6 (16-114)||(9306032-9306130)
chr6 (175-251)||(9306202-9306278)
chr6 (248-310)||(9306313-9306375)
[»] chr2 (3 HSPs)
chr2 (21-111)||(25649014-25649104)
chr2 (175-251)||(25649180-25649256)
chr2 (248-310)||(25649291-25649353)
[»] scaffold0471 (3 HSPs)
scaffold0471 (27-114)||(11736-11823)
scaffold0471 (175-251)||(11586-11663)
scaffold0471 (248-310)||(11488-11550)
[»] chr3 (1 HSPs)
chr3 (16-82)||(38442551-38442617)
[»] chr7 (1 HSPs)
chr7 (19-67)||(23455739-23455788)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 24685988 - 24685855
Alignment:
Q  175 tcatttttggatcgaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaagagaagagaatgatgaagaaaat 274  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  24685988 tcattttcggatcgaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaagagaagagaatgatgaagaaacg 24685889  T
Q  275 agaagagttagaacttcaaactcctctctctctc 308  Q
    ||||||||||||||||||||||||||||||||||    
T  24685888 agaagagttagaacttcaaactcctctctctctc 24685855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 24686158 - 24686060
Alignment:
Q  16 tggccaccatcctctccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttcttcatttttccag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24686158 tggccaccatcctctccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttcttcatttttccag 24686060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 24127219 - 24127132
Alignment:
Q  27 ctctccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttcttcatttttccag 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24127219 ctctccctcccttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttctccatttttccag 24127132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 24127059 - 24126983
Alignment:
Q  175 tcatttttggatcgaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24127059 tcatttttggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 24126983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 24126947 - 24126885
Alignment:
Q  248 ggaagagaagagaatgatgaagaaaatagaagagttagaacttcaaactcctctctctctcct 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24126947 ggaagagaagagaatgatgaagaaaagagaagagttagaacttcaaactcctctctctctcct 24126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 49383590 - 49383721
Alignment:
Q  177 atttttggatcgaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaagagaagagaatgatgaagaaaatag 276  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49383590 attttcggatcaaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaagagaagagaatgatgaagaaaagag 49383689  T
Q  277 aagagttagaacttcaaactcctctctctctc 308  Q
    ||||||||||||||||||||||||||||||||    
T  49383690 aagagttagaacttcaaactcctctctctctc 49383721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 49383418 - 49383516
Alignment:
Q  16 tggccaccatcctctccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttcttcatttttccag 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49383418 tggccaccatcctatccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttcttcatttttccag 49383516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 9306032 - 9306130
Alignment:
Q  16 tggccaccatcctctccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttcttcatttttccag 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9306032 tggccaccatcctctccctcccttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttctacatttttccag 9306130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 9306202 - 9306278
Alignment:
Q  175 tcatttttggatcgaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 251  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  9306202 tcatttttggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttaggttaaaattgggaa 9306278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 9306313 - 9306375
Alignment:
Q  248 ggaagagaagagaatgatgaagaaaatagaagagttagaacttcaaactcctctctctctcct 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9306313 ggaagagaagagaatgatgaagaaaagagaagagttagaacttcaaactcctctctctctcct 9306375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 25649014 - 25649104
Alignment:
Q  21 accatcctctccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttcttcatttttc 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25649014 accatcctctccctcccttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttctccatttttc 25649104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 25649180 - 25649256
Alignment:
Q  175 tcatttttggatcgaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 251  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25649180 tcattttcggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 25649256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 25649291 - 25649353
Alignment:
Q  248 ggaagagaagagaatgatgaagaaaatagaagagttagaacttcaaactcctctctctctcct 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25649291 ggaagagaagagaatgatgaagaaaagagaagagttagaacttcaaactcctctctctctcct 25649353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 11823 - 11736
Alignment:
Q  27 ctctccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttcttcatttttccag 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11823 ctctccctcccttccatctcctttctctttgttcttcatcaccatcaccatcttcatgtccttctctctttgttctccatttttccag 11736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 11663 - 11586
Alignment:
Q  175 tcatttttggatcgaatcaatcataaacaatacaaa-tggaatcaaatcaaacaacaaatttaggttagaattgggaa 251  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  11663 tcatttttggatcgaatcaatcataaacaataaaaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 11586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 11550 - 11488
Alignment:
Q  248 ggaagagaagagaatgatgaagaaaatagaagagttagaacttcaaactcctctctctctcct 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11550 ggaagagaagagaatgatgaagaaaagagaagagttagaacttcaaactcctctctctctcct 11488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 38442551 - 38442617
Alignment:
Q  16 tggccaccatcctctccctcacttccatctcctttctctttgttcttcatcaccatcaccatcttca 82  Q
    |||||||||||||||| ||  ||||||| ||||||||||||||||||||||||| |||||| |||||    
T  38442551 tggccaccatcctctcgcttccttccatttcctttctctttgttcttcatcaccttcaccaccttca 38442617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 23455739 - 23455788
Alignment:
Q  19 ccaccatcctctccctcac-ttccatctcctttctctttgttcttcatca 67  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23455739 ccaccatcctctccctccccttccatctcctttctctttgttcttcatca 23455788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University