View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_117 (Length: 327)
Name: NF10865A_low_117
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_117 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 33905236 - 33905545
Alignment:
| Q |
12 |
atgaatggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttcaaatgatttggca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33905236 |
atgaatggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttgaaatgatttggca |
33905335 |
T |
|
| Q |
112 |
agctgtttcacgtaaggttccttttatgaagttgaaaacaaacaggtctaggagattttttagagccctttatggtaataataaatataaggggcataaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33905336 |
agctgtttcacgtaaggttccttttatgaagttgaaaacaaacaggtctaggagattttttagagccctttatggtaataataaatataaggggcataaa |
33905435 |
T |
|
| Q |
212 |
tcaatacatgcaccacctaatttttggtgatattggtacatgaagttttgtctttagaaattcaagaatctttttatatacaatatagttatgattttga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33905436 |
tcaatacatgcaccacctaatttttggtgatattggtacatgaagttttgtctttagaaattcaagaatgtttttatatacaatatagttatgattttga |
33905535 |
T |
|
| Q |
312 |
tagtgaaatt |
321 |
Q |
| |
|
|||||||||| |
|
|
| T |
33905536 |
tagtgaaatt |
33905545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 9326358 - 9326228
Alignment:
| Q |
17 |
tggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttcaaatgatttggcaagctg |
116 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| | |||||||||| | | || || |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9326358 |
tggacaaaaatgtggaacaagttgaaagaggttgaacatttctttgaatataattttccatctaaggaaggtgatgctgtacaaatgatttggcaagctg |
9326259 |
T |
|
| Q |
117 |
tttcacgtaaggttccttttatgaagttgaa |
147 |
Q |
| |
|
|||||| ||| ||||||| |||||| ||||| |
|
|
| T |
9326258 |
tttcacataaagttccttctatgaaattgaa |
9326228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University