View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_118 (Length: 325)
Name: NF10865A_low_118
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_118 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 8054781 - 8054475
Alignment:
| Q |
7 |
aaagtttatcccaaatcaatgtgctccaacctaatatctacataagcaacaacaaaaataattataggatattttagtgcatttttggtattaagttagt |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8054781 |
aaagtttatcccaaatcaatgtactccaacctcatatctacataagcaacaacaaaaataattataggatattttagtgcatttttggtattaagttagt |
8054682 |
T |
|
| Q |
107 |
ttgtcataatcacaatgactcactacgattttgcaaaagttagtaactatataaatgaattgattgttgattgcagaaaatctcaatatttggttattag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8054681 |
ttgtcataatcacaatgactcactacgattttgcaaaagttagtaactatataaatgaattgattgttgattgcagaaaatctcaatatttggttattag |
8054582 |
T |
|
| Q |
207 |
atagttatgttattggtgtgaagtatcgattgattttatcggtgactaatatctgtcnnnnnnnttcgttgaacatctttagtgaggtctctcctttcaa |
306 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8054581 |
atagttatattattggtgtgaagtatcgactgattttatcggtgactaatatctgtcaaaaaaattcgttggacatctttagtgaggtctctcctttcaa |
8054482 |
T |
|
| Q |
307 |
ccatatt |
313 |
Q |
| |
|
||||||| |
|
|
| T |
8054481 |
ccatatt |
8054475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University