View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_12 (Length: 464)
Name: NF10865A_low_12
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 3 - 443
Target Start/End: Complemental strand, 25566303 - 25565858
Alignment:
| Q |
3 |
tgaagaaacacagaccacaatccaatgttccaatgtttattgttcaaactagacaaactagatttggtttatccattccatttgcaaacaataacatcat |
102 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25566303 |
tgaaaaaacacacaccacaatccaatgttccaatgtttattgttcaaactagacaaactagatttggtttatccgttccatttgcaaacaataacatcat |
25566204 |
T |
|
| Q |
103 |
caccacatgacacaatattacatccttggatatgcctagcatggcttcccctcttctgctcccactttgtaagtcctttcactttctcttttcctcacta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
25566203 |
caccacatgacacaatattacatccttggatatgcctagcatggcttcccctcttctgcttccactttgtaagtcctttcactttctctcttcctcactg |
25566104 |
T |
|
| Q |
203 |
tccaaaaatgcataatattgtgtgattgctgtaatcaa-------gttaatttatatttgatttgttccnnnnnnnnnnatagattctacttgtggtaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25566103 |
tccaaaaatgcataatattgtgtgattgctgtaatcaagttcactgttaatttatatttgatttgttcc--ttttttttatagattctacttgtggtaaa |
25566006 |
T |
|
| Q |
296 |
attccttctcttactgcttctcaaagcatttctgttgagaaacttagaagatttgctcttaaagtgaaatccacagagacaagggaatgcactgctaatg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
25566005 |
attccttctcttactgcttctcaaagcatttctgttgagaaacttagaagatttgctcttaaagtcaagtccacagagacaagggaatgcactgctaatg |
25565906 |
T |
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| Q |
396 |
atatttttaataccaattcacgtagagactttcttggattagcattag |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25565905 |
atatttttaataccaattcacgtagagactttcttggattagcattag |
25565858 |
T |
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