View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_134 (Length: 311)
Name: NF10865A_low_134
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_134 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 13960622 - 13960318
Alignment:
| Q |
7 |
tagtgcacctgtgaaatgacaactttggaaaacaaagccacttgagctgtcggatttggttcttccatcggcagctacgaaacattgttgttcttccaat |
106 |
Q |
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| T |
13960622 |
tagtgcacctgtgaaatgacaactttggaaaacaaagccacttgagctgtcagatttggttcttccatcggcagctacgaaacattgttgttcttctaat |
13960523 |
T |
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| Q |
107 |
ggttttcttacggtttgtttggagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgac |
206 |
Q |
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| T |
13960522 |
ggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgac |
13960423 |
T |
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| Q |
207 |
gttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttttctgctgttactcggagtgcaactgcttgatgttt |
306 |
Q |
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| T |
13960422 |
gttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatgttt |
13960323 |
T |
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| Q |
307 |
ctctg |
311 |
Q |
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||||| |
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| T |
13960322 |
ctctg |
13960318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 131 - 302
Target Start/End: Complemental strand, 13967662 - 13967491
Alignment:
| Q |
131 |
ttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgttgggattcggcgaagagtgttg |
230 |
Q |
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| T |
13967662 |
ttttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattggacgtagagtgtgt |
13967563 |
T |
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| Q |
231 |
cttggtaaccatctatttggcagttgtagaagattgctttttctgctgttactcggagtgcaactgcttgat |
302 |
Q |
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| T |
13967562 |
cttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgat |
13967491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 49865135 - 49865249
Alignment:
| Q |
186 |
tgcagtcacggtagaattgacgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttttctgctgttactcg |
285 |
Q |
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| T |
49865135 |
tgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacg |
49865234 |
T |
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| Q |
286 |
gagtgcaactgcttg |
300 |
Q |
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| T |
49865235 |
gagggccactgcttg |
49865249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 303
Target Start/End: Original strand, 49870992 - 49871189
Alignment:
| Q |
106 |
tggttttcttacggtttgtttggagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattga |
205 |
Q |
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| T |
49870992 |
tggttttctaacgatgagtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgt |
49871091 |
T |
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| Q |
206 |
cgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttttctgctgttactcggagtgcaactgcttgatg |
303 |
Q |
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| T |
49871092 |
cttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
49871189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 6875 - 6835
Alignment:
| Q |
167 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
207 |
Q |
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| T |
6875 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
6835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 44067730 - 44067770
Alignment:
| Q |
167 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
207 |
Q |
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| T |
44067730 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44067770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 44087574 - 44087534
Alignment:
| Q |
167 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
207 |
Q |
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| T |
44087574 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44087534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 44093036 - 44093076
Alignment:
| Q |
167 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
207 |
Q |
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| T |
44093036 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44093076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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