View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_137 (Length: 310)
Name: NF10865A_low_137
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_137 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 183 - 301
Target Start/End: Complemental strand, 25633788 - 25633670
Alignment:
| Q |
183 |
cgtcaccgaagtaaataggaggccgaggaggcacaaacagttcagaatcaatttgctgcattaaattacatggaaaagccaaaggaaaactaagtccaca |
282 |
Q |
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| T |
25633788 |
cgtcaccgaggtaaataggaggccgaggaggcacaaacagttcagaatcaatttgctgcattaaattacatggaaaaaccaaaggaaaactaagtccaca |
25633689 |
T |
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| Q |
283 |
tcaacaattggagtgttat |
301 |
Q |
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| T |
25633688 |
ttaacaattggagtgttat |
25633670 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 25633927 - 25633835
Alignment:
| Q |
2 |
acatttttcacaagaaactcgtcattttatgt--atatatcatttctttggtgtttcagcttatataccagaatagttttcagagaaatatgc |
92 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25633927 |
acatttttcacaagaaactcgtcattttatgtgtatatatcatttctttggtgtttcagcttatataccagaatagttttcagagaaatatgc |
25633835 |
T |
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