View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_14 (Length: 459)

Name: NF10865A_low_14
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_14
NF10865A_low_14
[»] chr5 (5 HSPs)
chr5 (27-190)||(35802663-35802826)
chr5 (300-436)||(35854545-35854681)
chr5 (319-434)||(10521323-10521438)
chr5 (300-373)||(35802504-35802577)
chr5 (61-137)||(10521033-10521109)
[»] chr4 (12 HSPs)
chr4 (324-459)||(55705908-55706043)
chr4 (330-432)||(54304257-54304359)
chr4 (324-436)||(45876742-45876854)
chr4 (330-436)||(47293489-47293595)
chr4 (325-430)||(45858817-45858922)
chr4 (13-154)||(55705559-55705700)
chr4 (45-154)||(45878670-45878779)
chr4 (324-430)||(56208543-56208649)
chr4 (34-97)||(54304053-54304116)
chr4 (53-148)||(56208877-56208972)
chr4 (86-154)||(47293221-47293289)
chr4 (45-102)||(45860206-45860263)
[»] chr8 (3 HSPs)
chr8 (312-459)||(7972059-7972206)
chr8 (330-459)||(7961689-7961818)
chr8 (27-154)||(7972415-7972542)
[»] chr2 (2 HSPs)
chr2 (330-430)||(24357488-24357588)
chr2 (53-154)||(24354011-24354112)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 8e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 35802826 - 35802663
Alignment:
Q  27 tcagttctcttgcttccgaaaaacccgtcattgcttcaatgtctgatgtggcaacaaatgcaggatactacatggcaatcggagccggaactatcgtagc 126  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||||||||    
T  35802826 tcagatctcttgcttcaaaaaaacccgtcattgcttcaatgtctgatgcggcaacaagtgcaggatactacatggcaatgggagcaggagctatcgtagc 35802727  T
Q  127 agaaaatcttactttaactggttcaattcgaggaacactctctcaatactttaaccttgacaat 190  Q
    ||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||    
T  35802726 agaaaatcttactttaactggttcaattcgaggaacggtttctcaaaactttaaccttgacaat 35802663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 300 - 436
Target Start/End: Original strand, 35854545 - 35854681
Alignment:
Q  300 acaagacgaaaaaggttgaacataggaggctttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgc 399  Q
    |||||| ||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||    
T  35854545 acaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattgc 35854644  T
Q  400 tatagcaaaattgaaggccaatatacctcaaaacaga 436  Q
    |||||||||||||||||||||||||||||||||||||    
T  35854645 tatagcaaaattgaaggccaatatacctcaaaacaga 35854681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 319 - 434
Target Start/End: Original strand, 10521323 - 10521438
Alignment:
Q  319 acataggaggctttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggcc 418  Q
    |||||||||| |||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||||||  |||| |||||||| |||||||| ||||||    
T  10521323 acataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattgctatcgcaaaattcaaggcc 10521422  T
Q  419 aatatacctcaaaaca 434  Q
    ||||||||||||||||    
T  10521423 aatatacctcaaaaca 10521438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 35802577 - 35802504
Alignment:
Q  300 acaagacgaaaaaggttgaacataggaggctttggaccggtaaggacgcaacatctcatggtttggttgatgct 373  Q
    |||||| ||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  35802577 acaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 10521033 - 10521109
Alignment:
Q  61 ttcaatgtctgatgtggcaacaaatgcaggatactacatggcaatcggagccggaactatcgtagcagaaaatctta 137  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||  ||||| |||  ||||||||||||||||||||    
T  10521033 ttcaatgtctgatgtagcagcaagtgcaggatactacatggcaacgggagcaggagatatcgtagcagaaaatctta 10521109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 324 - 459
Target Start/End: Original strand, 55705908 - 55706043
Alignment:
Q  324 ggaggctttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatat 423  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||  |||| ||||||||  |||||||||| || |||||    
T  55705908 ggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattgctattacaaaattgaaagctaatat 55706007  T
Q  424 acctcaaaacagaaaagttggtattgtggagctctc 459  Q
    ||||||||||||| | |||  | |||||||||||||    
T  55706008 acctcaaaacagagaggttattgttgtggagctctc 55706043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 330 - 432
Target Start/End: Original strand, 54304257 - 54304359
Alignment:
Q  330 tttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctca 429  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  54304257 tttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaatatacctca 54304356  T
Q  430 aaa 432  Q
    |||    
T  54304357 aaa 54304359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 436
Target Start/End: Complemental strand, 45876854 - 45876742
Alignment:
Q  324 ggaggctttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatat 423  Q
    ||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| || |||||    
T  45876854 ggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctattgctatagcaaaattgaaagctaatat 45876755  T
Q  424 acctcaaaacaga 436  Q
    ||||||| |||||    
T  45876754 acctcaagacaga 45876742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 330 - 436
Target Start/End: Original strand, 47293489 - 47293595
Alignment:
Q  330 tttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctca 429  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||  ||||  | || |||||||||||||||||||||||||||||||||||    
T  47293489 tttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattgctatagcaaaattgaaggccaatatacctca 47293588  T
Q  430 aaacaga 436  Q
    |||||||    
T  47293589 aaacaga 47293595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 325 - 430
Target Start/End: Complemental strand, 45858922 - 45858817
Alignment:
Q  325 gaggctttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatata 424  Q
    |||| |||||||||||||||| |||  |||||||||| |||||||||||||||||||| ||||  |||| ||||||||||| ||||||||||||||||||    
T  45858922 gagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctattgctatagccaaattgaaggccaatata 45858823  T
Q  425 cctcaa 430  Q
    ||||||    
T  45858822 cctcaa 45858817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 55705559 - 55705700
Alignment:
Q  13 aatatgggcagcagtcagttctcttgcttccgaaaaacccgtcattgcttcaatgtctgatgtggcaacaaatgcaggatactacatggcaatcggagcc 112  Q
    |||||||| || | |||| ||||||||| || ||||||| |||||||||||||||| ||| |||||| | | ||||||||| ||||||||||| |||||     
T  55705559 aatatgggaagaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagccagtgcaggatagtacatggcaatgggagct 55705658  T
Q  113 ggaactatcgtagcagaaaatcttactttaactggttcaatt 154  Q
    ||||  || ||||||||||||||||| |||||||||||||||    
T  55705659 ggaataatagtagcagaaaatcttacattaactggttcaatt 55705700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 45878779 - 45878670
Alignment:
Q  45 aaaaacccgtcattgcttcaatgtctgatgtggcaacaaatgcaggatactacatggcaatcggagccggaactatcgtagcagaaaatcttactttaac 144  Q
    ||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||| ||| |||| || ||||||| ||| || |||||    
T  45878779 aaaaaccagtcattgcttcaatgtctgatgtggcagcaagtggaggatactacatggcaatgggagcaggagctattgttgcagaaagtctaaccttaac 45878680  T
Q  145 tggttcaatt 154  Q
    ||||||||||    
T  45878679 tggttcaatt 45878670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 430
Target Start/End: Complemental strand, 56208649 - 56208543
Alignment:
Q  324 ggaggctttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatat 423  Q
    ||||| ||| ||||||||| || |||  ||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||   |||    
T  56208649 ggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctatagcaaaattgaaggctggtat 56208550  T
Q  424 acctcaa 430  Q
    |||||||    
T  56208549 acctcaa 56208543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 54304053 - 54304116
Alignment:
Q  34 tcttgcttccgaaaaacccgtcattgcttcaatgtctgatgtggcaacaaatgcaggatactac 97  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||    
T  54304053 tcttgctgccgaaaaacccatcattgcttcaatatctgatgtggcaacaagtgcaggatactac 54304116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 56208972 - 56208877
Alignment:
Q  53 gtcattgcttcaatgtctgatgtggcaacaaatgcaggatactacatggcaatcggagccggaactatcgtagcagaaaatcttactttaactggt 148  Q
    ||||||||||| |||||| || || || ||| || ||||||| |||||||||| ||||| |||  ||| || |||||||||||||| |||||||||    
T  56208972 gtcattgcttcgatgtctcatatgacagcaagtggaggataccacatggcaatgggagcaggagttattgttgcagaaaatcttaccttaactggt 56208877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 47293221 - 47293289
Alignment:
Q  86 gcaggatactacatggcaatcggagccggaactatcgtagcagaaaatcttactttaactggttcaatt 154  Q
    |||||||||||| ||||||| || || |||  ||| || |||||||||||||| |||||||||||||||    
T  47293221 gcaggatactacgtggcaatgggcgcaggagttattgttgcagaaaatcttaccttaactggttcaatt 47293289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 45860263 - 45860206
Alignment:
Q  45 aaaaacccgtcattgcttcaatgtctgatgtggcaacaaatgcaggatactacatggc 102  Q
    |||||||  |||||||||||||||||||||||||| | | || ||||||||| |||||    
T  45860263 aaaaaccaatcattgcttcaatgtctgatgtggcagctagtggaggatactatatggc 45860206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 459
Target Start/End: Complemental strand, 7972206 - 7972059
Alignment:
Q  312 aggttgaacataggaggctttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaatt 411  Q
    |||||| ||| |||||| ||||||||||||| || |||  |||| |||||||||| ||||||||  ||||  ||||  |||| |||||||||||||||||    
T  7972206 aggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgctattgctatagcaaaatt 7972107  T
Q  412 gaaggccaatatacctcaaaacagaaaagttggtattgtggagctctc 459  Q
    |||||||||| | |||||||||||| | |||  |||||||||||||||    
T  7972106 gaaggccaatcttcctcaaaacagacatgttactattgtggagctctc 7972059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 459
Target Start/End: Complemental strand, 7961818 - 7961689
Alignment:
Q  330 tttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctca 429  Q
    ||||||| ||||| || |||| |||| ||| |||||| |||||||||||||| |||||    || ||||||||||||||||||||||||||||| |||||    
T  7961818 tttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctca 7961719  T
Q  430 aaacagaaaagttggtattgtggagctctc 459  Q
    ||||| | | |||  |||||||||| ||||    
T  7961718 aaacaaacatgttactattgtggagttctc 7961689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 7972542 - 7972415
Alignment:
Q  27 tcagttctcttgcttccgaaaaacccgtcattgcttcaatgtctgatgtggcaacaaatgcaggatactacatggcaatcggagccggaactatcgtagc 126  Q
    |||| |||||||||||| ||||||| || |||||||  ||||||||| ||||||  |  |||||||||||||||||||| || || |||  ||| || ||    
T  7972542 tcaggtctcttgcttccaaaaaaccagttattgctttgatgtctgatctggcaatgagcgcaggatactacatggcaatgggcgcaggagttattgttgc 7972443  T
Q  127 agaaaatcttactttaactggttcaatt 154  Q
    |||||| ||||| |||||||||||||||    
T  7972442 agaaaaccttaccttaactggttcaatt 7972415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 24357488 - 24357588
Alignment:
Q  330 tttggaccggtaaggacgcaacatctcatggtttggttgatgctattggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctca 429  Q
    ||||||| ||||| || ||| |||| ||||||||||||||||||||||||||  | ||  | || ||||| |||||||||||||||||||||||||||||    
T  24357488 tttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccgagctattgccatagcaaaattgaaggccaatatacctca 24357587  T
Q  430 a 430  Q
    |    
T  24357588 a 24357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 24354011 - 24354112
Alignment:
Q  53 gtcattgcttcaatgtctgatgtggcaacaaatgcaggatactacatggcaatcggagccggaactatcgtagcagaaaatcttactttaactggttcaa 152  Q
    ||||||||||| ||| ||||||||||| ||| || |||||||||||||||||| ||| | |   |||| || ||||||| |||||| |||||||||||||    
T  24354011 gtcattgcttcgatggctgatgtggcagcaagtggaggatactacatggcaatgggaactgatgctattgttgcagaaagtcttaccttaactggttcaa 24354110  T
Q  153 tt 154  Q
    ||    
T  24354111 tt 24354112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University