View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_142 (Length: 302)
Name: NF10865A_low_142
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_142 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 10265677 - 10265959
Alignment:
| Q |
1 |
tatgcgaaatgagaatttagttacttgaattaaagaagatatcgttatagttaaattaaattttcaaattcggcatcataattttcaagactctttattt |
100 |
Q |
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| T |
10265677 |
tatgcgaaatgagaatttagtgacttgaattaaagaatgtatcgtta--gttaaattaaattttcaaattcggcatcataattttcaagacactttat-- |
10265772 |
T |
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| Q |
101 |
gttgtacaaagggttccccttagatgaaggatcttgatttagatgcactgggttacaatgccnnnnnnnnnnnnnnnngttattattcctttctttttac |
200 |
Q |
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| T |
10265773 |
-ttgtacaaagggttccccttagatgaaggatcttcctttagatgcacagggttacaatgccaaatagaaaataaaaagttattattcctttctttttac |
10265871 |
T |
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| Q |
201 |
aactaaacca-cccccatgaacaaaatttcattctctccatcatactacccaagtctgggatttggattcccttgtcatttctctcat |
287 |
Q |
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| T |
10265872 |
aactaaaccaccccccatgaacaaaattttattctctccatcatactacccaagtctgggatttggatcctcttgtcatttctctcat |
10265959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 10284702 - 10284984
Alignment:
| Q |
1 |
tatgcgaaatgagaatttagttacttgaattaaagaagatatcgttatagttaaattaaattttcaaattcggcatcataattttcaagactctttattt |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10284702 |
tatgcgaaatgagaatttagtgacttgaattaaagaatatatcgtta--gttaaattaaattttcaaattcggcatcataattttcatgactctttat-- |
10284797 |
T |
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| Q |
101 |
gttgtacaaagggttccccttagatgaaggatcttgatttagatgcactgggttacaatgccnnnnnnnnnnnnnnnngttattattcctttctttttac |
200 |
Q |
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| T |
10284798 |
-ttgtacaaagggttccccttagatgaaggatcttcctttagatgcacagggttacaatgccaaatagaaaataaaaagttattattcctttctttttac |
10284896 |
T |
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| Q |
201 |
aactaaacca-cccccatgaacaaaatttcattctctccatcatactacccaagtctgggatttggattcccttgtcatttctctcat |
287 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
10284897 |
aactaaaccaccccccatgaacaaaattttattctctccatcatactacccaagtctgggatttggatcctcttatcatttctctcat |
10284984 |
T |
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