View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_152 (Length: 294)
Name: NF10865A_low_152
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_152 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 34923136 - 34922909
Alignment:
| Q |
6 |
tttggtgttcttagttggtgttgtttggttttactttaggtacaaaaatttcaaggactcaaaaagggcttttgataaatcgaaatggactttgatgtcg |
105 |
Q |
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| T |
34923136 |
tttggtgttcttagttggtgttgtttggttttactttaggtacaaaaatttcaaggactcaaaaagggcttttgataaatcgaaatggactttgatgtcg |
34923037 |
T |
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| Q |
106 |
tttcataaactgggtttcggtgaagatgaaattttaaattgtcttgacgaagataatgtcattggaagtggttcttccggtaaggtttacaaggttgtac |
205 |
Q |
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| T |
34923036 |
tttcataaactgggtttcggtgaagatgaaattttaaattgtcttgacgaagataatgtcattggaagtggttcttccggtaaggtttacaaggttgtac |
34922937 |
T |
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| Q |
206 |
ttaacagtggagaagctgttgctgtgaa |
233 |
Q |
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| T |
34922936 |
ttaacagtggagaagctgttgctgtgaa |
34922909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 34924793 - 34924861
Alignment:
| Q |
226 |
gctgtgaatggaccttgaatgttggtgttggagagattaagttcggttacggtggtgtttgtggagtca |
294 |
Q |
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| T |
34924793 |
gctgtgaatggaccttgaatgttggtgttggagagattaagttcagttacggtggtgtttgtggagtca |
34924861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 4196338 - 4196494
Alignment:
| Q |
77 |
ttgataaatcgaaatggactttgatgtcgtttcataaactgggtttcggtgaagatgaaattttaaattgtcttgacgaagataatgtcattggaagtgg |
176 |
Q |
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| T |
4196338 |
ttgataaaacgaaatggacattgatgtcgtttcataaactgggttttggtgaagatgaggtcttgaattgtcttgatgaagataatgtcatagggagtgg |
4196437 |
T |
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| Q |
177 |
ttcttccggtaaggtttacaaggttgtacttaacagtggagaagctgttgctgtgaa |
233 |
Q |
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| T |
4196438 |
atcttccgggaaagtctacaaggttgtgcttcgcaacggggaagctgttgctgtgaa |
4196494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 10893069 - 10893135
Alignment:
| Q |
228 |
tgtgaatggaccttgaatgttggtgttggagagattaagttcggttacggtggtgtttgtggagtca |
294 |
Q |
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| T |
10893069 |
tgtgaatggaccttgaatgtttgcgttggagaggttaagttcagttacggtggtgttggtggagtca |
10893135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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