View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_157 (Length: 289)
Name: NF10865A_low_157
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_157 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0320 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 50680582 - 50680870
Alignment:
| Q |
1 |
aaaatcccaaaactcttcttcatgttcatgtctatcttcatctcttccaatcaaacccaaacaaacaaaaattactagaacaaaggacattggtacatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
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| T |
50680582 |
aaaatcccaaaactcttcttcatgttcatgtctatcttcatctcttccaatcaaacccaaacaaacaaaaattaccagaacaaagaagcatggtacatat |
50680681 |
T |
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| Q |
101 |
aagcatgctacaccaattcatttcattcttagtcataataatactctaatttgttttcccgaataaaaatcattctttctttgttgttgttgatgtgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50680682 |
aagcatgctacaccaattcatttcattcttagtcataataataccctaatttgttttcccgaataaaaatcattctttctttgttgttgttgatgtgtga |
50680781 |
T |
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| Q |
201 |
attaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttctccctttaaaaagccacattaa |
289 |
Q |
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| T |
50680782 |
attaaggtttatcactctagttttgtggacgatgaaggagttaactgagcttgtggatgccctcttcttcctttaaaaagccacattaa |
50680870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 19729 - 20007
Alignment:
| Q |
1 |
aaaatcccaaaactcttcttcatgttcatgtctatcttcatctcttccaatcaaacccaaacaaacaaaaattactagaacaaaggacattggtacatag |
100 |
Q |
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| T |
19729 |
aaaatcccaaaactcttcttcatgttcatgtctatcttcatctcttccaa----------acaaacaaaaattaccagaacaaagaagcatggtacataa |
19818 |
T |
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| Q |
101 |
aagcatgctacaccaattcatttcattcttagtcataataatactctaatttgttttcccgaataaaaatcattctttctttgttgttgttgatgtgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19819 |
aagcatgctacaccaattcatttcattcttagtcataataataccctaatttgttttcccgaataaaaatcattctttctttgttgttgttgatgtgtga |
19918 |
T |
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| Q |
201 |
attaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttctccctttaaaaagccacattaa |
289 |
Q |
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| T |
19919 |
attaaggtttatcactctagttttgtggacgatgaaggagttaacagagcttgtggatgccctcttctacctttaaaaagccacattaa |
20007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 47893962 - 47893860
Alignment:
| Q |
187 |
ttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttctccctttaaaaagccacat |
286 |
Q |
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||||| |||| |||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||| ||||||||||| ||| ||||||| ||||| |
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| T |
47893962 |
ttgtttatgtatgaattaaggtttatcactctagtttcgtagacgatgaaggaattaacagagcttgtgggtgccctcttcttcctctaaaaagtcacat |
47893863 |
T |
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| Q |
287 |
taa |
289 |
Q |
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||| |
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| T |
47893862 |
taa |
47893860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 47894043 - 47893986
Alignment:
| Q |
95 |
acatagaagcatgctacaccaattcatttcattcttagtcataataatactctaattt |
152 |
Q |
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| T |
47894043 |
acatagaaacatggtacgtcaattcatttcattcttattcctaataataccctaattt |
47893986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34018997 - 34018923
Alignment:
| Q |
1 |
aaaatcccaaaactcttcttcatgttcatgtctatcttcatctcttccaatcaaacccaaacaaacaaaaattac |
75 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34018997 |
aaaaacccaaaactcttcttcatgttcaagtctatcttcatctcttccaatccaacccaaacaaacaaaaattac |
34018923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 34018787 - 34018856
Alignment:
| Q |
7 |
ccaaaactcttcttcatgttcatgtctatcttcatctcttccaatcaaacccaaacaaacaaaaattact |
76 |
Q |
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| T |
34018787 |
ccaaaactctttttcatgttcatatctatcttcatctcttccaatctaacccaaacaaacaaaaattact |
34018856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 17776656 - 17776613
Alignment:
| Q |
19 |
ttcatgttcatgtctatcttcatctcttccaatcaaacccaaac |
62 |
Q |
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|||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
17776656 |
ttcatgttcatgtctatcttcatcacttccaatccaactcaaac |
17776613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 19077957 - 19077914
Alignment:
| Q |
19 |
ttcatgttcatgtctatcttcatctcttccaatcaaacccaaac |
62 |
Q |
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| T |
19077957 |
ttcatgttcatgtctatcttcatcacttccaatccaactcaaac |
19077914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 29043757 - 29043817
Alignment:
| Q |
15 |
cttcttcatgttcatgtctatcttca-tctcttccaatcaaacccaaacaaacaaaaatta |
74 |
Q |
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|||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| |
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| T |
29043757 |
cttcttcatgttgatgtctatcttaaatctcttccaatccaacccaaacaaacaaaaatta |
29043817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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