View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_16 (Length: 455)
Name: NF10865A_low_16
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 23 - 449
Target Start/End: Original strand, 33102087 - 33102513
Alignment:
| Q |
23 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102087 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
33102186 |
T |
|
| Q |
123 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102187 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
33102286 |
T |
|
| Q |
223 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
322 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102287 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
33102386 |
T |
|
| Q |
323 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttcttgagacagatgctgaggttggtga |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102387 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttcttgagacagatgctgaggttggtga |
33102486 |
T |
|
| Q |
423 |
tgatggtaagcttcatgttcatctcag |
449 |
Q |
| |
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|||||||||||||||||||||| |||| |
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|
| T |
33102487 |
tgatggtaagcttcatgttcatgtcag |
33102513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 381
Target Start/End: Original strand, 52716522 - 52716731
Alignment:
| Q |
172 |
gttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgt |
271 |
Q |
| |
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||||||||||| || ||| | | ||||||||||||||| | || || | |||||||| ||| |||| |||||||| || | |||||||||||| | |
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| T |
52716522 |
gttatgggaatccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagtgttatttggtacactctta |
52716621 |
T |
|
| Q |
272 |
tattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgt |
371 |
Q |
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| |||||| | ||||| ||| | | |||||| ||||| || | |||||||||||||||||||| |||||||| | || || || ||||||||||| || |
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| T |
52716622 |
tgttgtttttgtttgaatatagagctgctaaacttcttataacagaacagtttcctgaaactgcagcttctataacatcattcaaagttgattctgacgt |
52716721 |
T |
|
| Q |
372 |
tgtttctctt |
381 |
Q |
| |
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|||||||||| |
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|
| T |
52716722 |
tgtttctctt |
52716731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 52711358 - 52711419
Alignment:
| Q |
316 |
gaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttc |
377 |
Q |
| |
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||||||||||| |||||||| |||||||| | || || || |||||||||||||||||||| |
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| T |
52711358 |
gaacagtttccagaaactgcagcttctataacatcattcaaagttgattctgatgttgtttc |
52711419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 28 - 441
Target Start/End: Complemental strand, 10838990 - 10838577
Alignment:
| Q |
28 |
atgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagcttagagt |
127 |
Q |
| |
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||||||| |||||||| || || || ||||||||||||||||||||||| | |||||| || | ||||| ||||| ||||| | ||||| | |
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| T |
10838990 |
atgaacttcaggttcatagctgcagacacacttcaaaaaatcatcatgctagtagcactttcattatggacattgttcactaaaaatggcaatttagaat |
10838891 |
T |
|
| Q |
128 |
ggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttat |
227 |
Q |
| |
|
||||||| |||||||| || | |||||| | || ||||||||||||||||||||||| | | || |||||||||||||| ||||| |||| | | || |
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|
| T |
10838890 |
ggatgataacaatcttttcattatcaacacttcctaacactttggttatgggaattcctttgttaattgctatgtatggtgattattcaggtagcttaat |
10838791 |
T |
|
| Q |
228 |
ggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcct |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | || | |||||||||||||| ||||||||||||||| |||| ||||| |||||||| |
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| T |
10838790 |
ggttcaagttgtggttcttcagtgtattatttggtacactcttttgctttttctttttgagtaccgtggtgctaagcttttaatcatggagcagtttcca |
10838691 |
T |
|
| Q |
328 |
gaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttcttgagacagatgctgaggttggtgatgatg |
427 |
Q |
| |
|
||||| || ||||| || ||||||||||||| ||||| || ||| | || | ||||| |||||||||||||| || ||||| ||||||||||||| |
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| T |
10838690 |
gaaaccgcggcttccatcgtttcctttaaggtcgattcggacgttatgtcgttagatggaagagattttcttgaaactgatgcatcagttggtgatgatg |
10838591 |
T |
|
| Q |
428 |
gtaagcttcatgtt |
441 |
Q |
| |
|
| ||| | |||||| |
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| T |
10838590 |
ggaagttacatgtt |
10838577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 199 - 440
Target Start/End: Original strand, 34971055 - 34971296
Alignment:
| Q |
199 |
atgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtg |
298 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| | || |||||||| |||||||||||||| || ||| | |||||| | ||||||||| | |||| |
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| T |
34971055 |
atgtatggtgatgattctggtacccttatggttcaaatagttgttcttcaatgtatcatttggtatacattgatgttgtttttgtttgagtataggggtg |
34971154 |
T |
|
| Q |
299 |
ctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttct |
398 |
Q |
| |
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||| | |||| ||| | |||||||||||||| ||||||| ||||||||| || || || ||||||||||||||| ||||| | ||||| | ||| || |
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| T |
34971155 |
ctaggattctcattgttgaacagtttcctgatactgctggttctattatatcattcaaagttgattctgatgttctttctttggatggtaaagagccact |
34971254 |
T |
|
| Q |
399 |
tgagacagatgctgaggttggtgatgatggtaagcttcatgt |
440 |
Q |
| |
|
| | || || ||||| |||||||| |||||||| |||||||| |
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|
| T |
34971255 |
tcaaactgaagctgaagttggtgaagatggtaaacttcatgt |
34971296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 25038852 - 25038959
Alignment:
| Q |
163 |
aacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggt |
262 |
Q |
| |
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||||||||||||||||||||||| | || | || ||||||||||||| ||| |||| | ||||| ||| |||| |||||||| ||||||||||||| |
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| T |
25038852 |
aacactttggttatgggaattcctttacttaaaggaatgtatggtgaattttcaggtagtttaatggtacaaattgttgttcttcaatgtatcatttggt |
25038951 |
T |
|
| Q |
263 |
acactttg |
270 |
Q |
| |
|
| |||||| |
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|
| T |
25038952 |
atactttg |
25038959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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