View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_164 (Length: 285)
Name: NF10865A_low_164
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_164 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 29442464 - 29442593
Alignment:
| Q |
159 |
ctgtgttgcatttgggtcgtacatggagaggaagaaaggaaaaaccctaa-------accctaactagaaccttccttccttccttccaatggcggatct |
251 |
Q |
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| T |
29442464 |
ctgtgttgcatttgggtcgtacaaggagaggaagaaaggaaaaaccctaaggcctaaaccctaactagaacctt----ccttccttccaatggtggatct |
29442559 |
T |
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| Q |
252 |
tccgccggagatacttaccggaatcctctctctg |
285 |
Q |
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| T |
29442560 |
tccgccggagatacttaccggaatcctctctctg |
29442593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 29442311 - 29442391
Alignment:
| Q |
7 |
aataaaacagagagaatcataaatgaaggatattaactcagagtaattcataattcgtgcgtccaagatcacgtaatcaag |
87 |
Q |
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| T |
29442311 |
aataaaacagagagaatcataaatgaaggatattaactcagagtaattcataattcgtgcgtccaagatcatgtaatcaag |
29442391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 29424226 - 29424129
Alignment:
| Q |
187 |
aggaagaaaggaaaaaccctaaaccctaactagaaccttccttccttccttccaatggcggatcttccgccggagatacttaccggaatcctctctctg |
285 |
Q |
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| T |
29424226 |
aggaagaaatgaaaaactctaaaccctagctagaacctaacttccaagct-ccaatgacggatcttccgccggagatactcaccggaatcctctctctg |
29424129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 29452537 - 29452585
Alignment:
| Q |
237 |
tccaatggcggatcttccgccggagatacttaccggaatcctctctctg |
285 |
Q |
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| T |
29452537 |
tccaatggcggatcttccgccggagatacttaccggtatcctctctctg |
29452585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 29452466 - 29452503
Alignment:
| Q |
202 |
accctaaaccctaactagaaccttccttccttccttcc |
239 |
Q |
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| T |
29452466 |
accctaaaccctagctacaaccttccttccttccttcc |
29452503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 10354157 - 10354101
Alignment:
| Q |
190 |
aagaaaggaaaaaccctaaaccctaactagaaccttccttccttccttccaatggcgg |
247 |
Q |
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| T |
10354157 |
aagaaatgaaaaaccctaaaccctagc-agaaccttcattccttccttacaatggcgg |
10354101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 9283343 - 9283404
Alignment:
| Q |
223 |
cttccttccttccttccaatggcg---gatcttccgccggagatacttaccggaatcctctc |
281 |
Q |
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| T |
9283343 |
cttccttccttccttccaatggcgtccgatcttccgccggacatacttgccgaaatcttctc |
9283404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 10336785 - 10336751
Alignment:
| Q |
226 |
ccttccttccttccaatggcggatcttccgccgga |
260 |
Q |
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| T |
10336785 |
ccttccttccttacaatggcggatcttccgccgga |
10336751 |
T |
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