View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_169 (Length: 282)
Name: NF10865A_low_169
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_169 |
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| [»] scaffold0002 (3 HSPs) |
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| [»] scaffold0263 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 401835 - 401554
Alignment:
| Q |
1 |
aaaacaaagtatatattaatttctcatatatcgatcctccaaaatgtcaacagctcctatcatcggtgacaatgatgtgaatccagtcatttttagagaa |
100 |
Q |
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| T |
401835 |
aaaacaaagtatatattaatttctcatatatcgatcctccaaaatgtcaacagctcctatcatcggtgacaatgatgtgaatccagtcatttttagagaa |
401736 |
T |
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| Q |
101 |
tacattggcgtcgagtcctacccagattctttaaataatttcccagctgatattatcggccgccacatccctgaattccatttcattttgggctttgccc |
200 |
Q |
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| T |
401735 |
tacattggcgtgaagtcctacccagattctttaaataatttcccagctgatattatcggccgccacatccctgaattccatttcattttgggctttgccc |
401636 |
T |
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| Q |
201 |
atgagacttacgtcgatggaaaaggcaccggaattttcaacgccagttggaagactcctttcttcagtccagacaatgttga |
282 |
Q |
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| T |
401635 |
atgagacttacgtcgatggaaaaggcaccggaattttcaacgccagttggaagattcctttctttggtccagacaatgttga |
401554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 405383 - 405323
Alignment:
| Q |
1 |
aaaacaaagtatatattaatttctcatatatcgatcctccaaaatgtcaacagctcctatc |
61 |
Q |
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| T |
405383 |
aaaagaaattatatattaatttctcatatatcgatcctccgaaatgtcaacagctcctatc |
405323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 93611 - 93525
Alignment:
| Q |
59 |
atcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggcgtcgagtcctacccagattctttaaataatttccca |
145 |
Q |
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| T |
93611 |
atcatcggtgacaatgctgttgatccattcatttttcgagaatacattggcgtgaagccatacccagcttctcttaataatttccca |
93525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 15441 - 15355
Alignment:
| Q |
59 |
atcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggcgtcgagtcctacccagattctttaaataatttccca |
145 |
Q |
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| T |
15441 |
atcatcggtgacaatgctgttgatccattcatttttcgagaatacattggcgtgaagccatacccagcttctcttaataatttccca |
15355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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