View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_172 (Length: 279)
Name: NF10865A_low_172
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_172 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 43155099 - 43155314
Alignment:
| Q |
4 |
gttctgtaatctctgattctgatatgtaaaattcgaaccggttactcttctcgctgtcgcggacatgttgaatgttttgatgaggggttgatgatgaaga |
103 |
Q |
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| T |
43155099 |
gttctgtaatctctgattctgatatgtaaaattcaaaccggttactcttctcgctgtcgaggacatgttgaatgttttgatgagtggttgatga---aga |
43155195 |
T |
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| Q |
104 |
cggattaattaaatttgaatataatgctataaaagcaagaagttgattgcagagaaggaacatgtaagtcatgtcaatgatgtagctaaagaattgcata |
203 |
Q |
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| T |
43155196 |
gggattgattaaatttgaatataatgctataaaagcaagaagtgtattgcagagaaggaacatgtaagtcttttcaatgatgtagctaaagaattgcata |
43155295 |
T |
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| Q |
204 |
aggaatggattcaaggact |
222 |
Q |
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| T |
43155296 |
aggaatggattcaaggact |
43155314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 43167734 - 43167553
Alignment:
| Q |
4 |
gttctgtaatctctgattctgatatgtaaaattcgaaccggttactcttctcgctgtcgcggacatgttgaatgttttgatgaggggttgatgatgaaga |
103 |
Q |
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| T |
43167734 |
gttctgtaatctctgattctggtatgtaaaattcgaaccggttactcttctcgctgtcgtggacatgttcaatgttttgatgagtggt---tgatgaaga |
43167638 |
T |
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| Q |
104 |
cggattaattaaatttgaatataatgctataaaagcaagaagttgattgcagagaaggaacatgtaagtcatgtcaatgatgtag |
188 |
Q |
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| T |
43167637 |
gggattgattaaacttgaatataatgctataaaagcaagaatgatattgcaaagaaggaacatgtaactcttgtcaatggtgtag |
43167553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 43172294 - 43172369
Alignment:
| Q |
132 |
ataaaagcaagaagttgattgcagagaaggaacatgtaagtcatgtcaatgatgtagctaaagaattgcataagga |
207 |
Q |
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| T |
43172294 |
ataaaagcaagaagggcatttcagagagggaacatgtaactcttgtcaatgatgtagcttaagaattgcataagga |
43172369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 39843148 - 39843220
Alignment:
| Q |
153 |
cagagaaggaacatgtaagtcatgtca---atgatgtagctaaagaattgcataaggaatggattcaaggact |
222 |
Q |
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| T |
39843148 |
cagagaatgaacatgtaagtcttttcattaatgatgtagctaaagaattgcataaggaatggattcaaggact |
39843220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 47706246 - 47706174
Alignment:
| Q |
153 |
cagagaaggaacatgtaagtcatgtca---atgatgtagctaaagaattgcataaggaatggattcaaggact |
222 |
Q |
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| T |
47706246 |
cagagaatgaacatgtaagtcttttcattaatgatgtagctaaagaattgcataaggaatggattcaaggact |
47706174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 45228193 - 45228268
Alignment:
| Q |
132 |
ataaaagcaagaagttgattgcagagaaggaacatgtaagtcatgtcaatgatgtagctaaagaattgcataagga |
207 |
Q |
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| T |
45228193 |
ataaaagcaagaagggcttttcagagagggaacatgtaactcttgtcgatgatgtagcttaagaattgcataagga |
45228268 |
T |
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