View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_180 (Length: 278)
Name: NF10865A_low_180
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_180 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 24511574 - 24511831
Alignment:
| Q |
18 |
acatcattggctataataaaggaaataagtcgtattgtactgcaatactacaagtcaaacaaacnnnnnnngtggtattgtactgcactatgnnnnnnnn |
117 |
Q |
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| T |
24511574 |
acatcattggctataataaaggaaataagtcgtattgtactgcaatactacaagtcaaacaaacaaaaaaagtcgtattgtactgcactatgtttttttt |
24511673 |
T |
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| Q |
118 |
n---aattatgaatgaatannnnnnnaattatggataaat-gggcttaaactctaaccacaagaacaataagcaaaagactaaa-acttataggaagtaa |
212 |
Q |
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|||||||||| |||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |
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| T |
24511674 |
ttttaattatgaataaatatttttttaattatgaataaatagggcttaaactctaacca--agaacaataagcaaaagactaaatacttataggaagtga |
24511771 |
T |
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| Q |
213 |
aagagttcctatcggtcatctagaaaaacaaaactacaactaagatgtatcccattaaat |
272 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| |
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| T |
24511772 |
aagagttcctatcggtcaacaagggaaacaaaactacaactaagatgtatcccactaaat |
24511831 |
T |
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