View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_187 (Length: 274)

Name: NF10865A_low_187
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_187
NF10865A_low_187
[»] chr7 (11 HSPs)
chr7 (6-274)||(35938762-35939030)
chr7 (46-269)||(35981485-35981708)
chr7 (46-269)||(36002897-36003120)
chr7 (43-269)||(36221975-36222201)
chr7 (43-269)||(32727039-32727265)
chr7 (37-269)||(36217984-36218216)
chr7 (43-269)||(35957461-35957687)
chr7 (43-269)||(35976916-35977142)
chr7 (43-269)||(35998328-35998554)
chr7 (48-269)||(35946258-35946479)
chr7 (88-264)||(35951937-35952113)
[»] chr1 (2 HSPs)
chr1 (67-233)||(18117552-18117718)
chr1 (45-266)||(18125183-18125404)
[»] chr2 (1 HSPs)
chr2 (43-233)||(26329053-26329243)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 35938762 - 35939030
Alignment:
Q  6 aagtttagcaatactgcatctataagtgcggaaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatca 105  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35938762 aagtttagcaatactgcatctataatcgcggaaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatca 35938861  T
Q  106 tagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttg 205  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35938862 tagcttaattttagtgcaggtaaaatatcattttgcttctgttctaaattccatatctcagaatctcttacaaattcccacttatttaaatcaaattttg 35938961  T
Q  206 aaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttg 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35938962 aaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttg 35939030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 35981485 - 35981708
Alignment:
Q  46 tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct 145  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||||||||||| || | |||    
T  35981485 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 35981584  T
Q  146 gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaac 245  Q
    | |||| |||||||| ||||||||| |||| |||| ||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  35981585 gctctagattccataactcagaatcccttacaaatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaac 35981684  T
Q  246 tccttgacattttttcacaatttc 269  Q
    |||| |||||||||||||||||||    
T  35981685 tcctcgacattttttcacaatttc 35981708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 36002897 - 36003120
Alignment:
Q  46 tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct 145  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||||||||||| || | |||    
T  36002897 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 36002996  T
Q  146 gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaac 245  Q
    | |||| |||||||| ||||||||| |||| |||| ||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  36002997 gctctagattccataactcagaatcccttacaaatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaac 36003096  T
Q  246 tccttgacattttttcacaatttc 269  Q
    |||| |||||||||||||||||||    
T  36003097 tcctcgacattttttcacaatttc 36003120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 43 - 269
Target Start/End: Complemental strand, 36222201 - 36221975
Alignment:
Q  43 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 142  Q
    |||||||||||||| | |||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||  || |     
T  36222201 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct 36222102  T
Q  143 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 242  Q
    | |||||||| ||||| ||||||   |||||||  |||  |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||    
T  36222101 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaaatcaaattttgataacagagaacttcctaatgttttgacagccagcgg 36222002  T
Q  243 aactccttgacattttttcacaatttc 269  Q
    ||||||   ||||||||||||||||||    
T  36222001 aactccagcacattttttcacaatttc 36221975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 43 - 269
Target Start/End: Original strand, 32727039 - 32727265
Alignment:
Q  43 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 142  Q
    |||||||||||||| ||||||||  |||||||||| |||||||| |||||||| ||||||||||||||||| || | ||||||||||||||||| || |     
T  32727039 taatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttct 32727138  T
Q  143 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 242  Q
    ||||||||||||||||||||||||||||||| | ||||  |||||||||||||||| ||||||| || |  ||||||| ||||||| ||||||  |||||    
T  32727139 tctgttctaaattccatatctcagaatctctcacaaatatccacttatttaaatcatattttgagaataaggaacttcgtaatgttctcacagaaagtgg 32727238  T
Q  243 aactccttgacattttttcacaatttc 269  Q
    ||| |||  ||||||||||||||||||    
T  32727239 aacccctgcacattttttcacaatttc 32727265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 37 - 269
Target Start/End: Complemental strand, 36218216 - 36217984
Alignment:
Q  37 aaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcat 136  Q
    ||||| || ||||||||||| | ||||||| |||||||||| || ||||  || ||||| ||||||||||||||||||||||  ||||||||||||||||    
T  36218216 aaggtatagtctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcat 36218117  T
Q  137 tttgcatctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagc 236  Q
     || | |||||||||||||||||||||||   ||||||| ||||  |||||||| ||||||||||||||| ||||||||||||||||  ||| |||||||    
T  36218116 ctttcttctgttctaaattccatatctcatggtctcttacaaataaccacttatctaaatcaaattttgagaacagagaacttcctaccgttctcacagc 36218017  T
Q  237 cagtggaactccttgacattttttcacaatttc 269  Q
    ||| ||||||||   ||||||||||||||||||    
T  36218016 cagcggaactccagcacattttttcacaatttc 36217984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 269
Target Start/End: Original strand, 35957461 - 35957687
Alignment:
Q  43 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 142  Q
    |||||||||||||| |||||||||||||||||||| || ||||  || ||||| ||||||||||| ||||||||||| |||||||||||||||||   |     
T  35957461 taatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatct 35957560  T
Q  143 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 242  Q
    | |||||||||||||| |||||||| || || | ||||||||||||| ||| |||||| ||||| || ||||||||| |||| ||| |||| || |||||    
T  35957561 tttgttctaaattccacatctcagagtccctaacaaattcccacttacttatatcaaagtttgagaagagagaacttgctaaagttctcacggctagtgg 35957660  T
Q  243 aactccttgacattttttcacaatttc 269  Q
    ||| ||||| |||||||||||||||||    
T  35957661 aaccccttggcattttttcacaatttc 35957687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 43 - 269
Target Start/End: Original strand, 35976916 - 35977142
Alignment:
Q  43 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 142  Q
    |||||||||||||| ||||||| |||| ||||||| || ||||  || ||||| ||||||||||||||||||||||| |||||||||||| ||| || |     
T  35976916 taatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttct 35977015  T
Q  143 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 242  Q
    | |||||||||||||| |||||||| || || |  |||||||||||  ||| |||||| ||||| || |||||||||||||||||| ||||||| || ||    
T  35977016 tttgttctaaattccacatctcagagtccctaacgaattcccacttgcttatatcaaagtttgagaagagagaacttcctaatgttctcacagctagcgg 35977115  T
Q  243 aactccttgacattttttcacaatttc 269  Q
    ||| ||||| || ||||| ||||||||    
T  35977116 aaccccttggcacttttttacaatttc 35977142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 43 - 269
Target Start/End: Original strand, 35998328 - 35998554
Alignment:
Q  43 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 142  Q
    |||||||||||||| ||||||| |||| ||||||| || ||||  || ||||| ||||||||||||||||||||||| |||||||||||| ||| || |     
T  35998328 taatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttct 35998427  T
Q  143 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 242  Q
    | |||||||||||||| |||||||| || || |  |||||||||||  ||| |||||| ||||| || |||||||||||||||||| ||||||| || ||    
T  35998428 tttgttctaaattccacatctcagagtccctaacgaattcccacttgcttatatcaaagtttgagaagagagaacttcctaatgttctcacagctagcgg 35998527  T
Q  243 aactccttgacattttttcacaatttc 269  Q
    ||| ||||| || ||||| ||||||||    
T  35998528 aaccccttggcacttttttacaatttc 35998554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 48 - 269
Target Start/End: Original strand, 35946258 - 35946479
Alignment:
Q  48 tttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgt 147  Q
    ||||||| | || ||||||||||||||||| || || |  || ||||| ||||||||||| ||||||||||| |||||||| ||||||| || | | |||    
T  35946258 tttgggaaaaagagaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgt 35946357  T
Q  148 tctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactc 247  Q
    ||||||||||| |||||||| || || |  |||||||||||| ||| |||||| ||||| || ||||||||| |||||||| |||| || |||||||| |    
T  35946358 tctaaattccacatctcagagtccctaacgaattcccacttacttatatcaaagtttgagaagagagaacttgctaatgttctcacggctagtggaaccc 35946457  T
Q  248 cttgacattttttcacaatttc 269  Q
    |||| |||||||||||||||||    
T  35946458 cttggcattttttcacaatttc 35946479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 35951937 - 35952113
Alignment:
Q  88 taggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcagaatctcttataaattcccact 187  Q
    |||||||  |||||||||||||||||||| || |||||||||||||||| || |   |||||||||||||| ||  |||| ||||| | |||||||||||    
T  35951937 taggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaaatagcagagtctctgacaaattcccact 35952036  T
Q  188 tatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcaca 264  Q
    || ||||||| || ||||| || || |||||||| |||| |||||||||||||||||| ||||||||||||||||||    
T  35952037 tacttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaaccccttgacattttttcaca 35952113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 18117552 - 18117718
Alignment:
Q  67 taagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcag 166  Q
    |||||||| |||||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||    
T  18117552 taagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttttgttctaaagtccacatctcag 18117651  T
Q  167 aatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcac 233  Q
    | ||||||  || |||||| ||||||||||||||||||||||||||| | |||||||||||| ||||    
T  18117652 agtctcttgcaagttcccatttatttaaatcaaattttgaaaacagacagcttcctaatgttctcac 18117718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 266
Target Start/End: Original strand, 18125183 - 18125404
Alignment:
Q  45 atctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatc 144  Q
    |||||| ||||| ||||| ||||||||||| || ||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||| ||    |    
T  18125183 atctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctttttgc 18125282  T
Q  145 tgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaa 244  Q
    |||| ||||||||| | |||||||||||||| ||||  |||  ||||||||||||||||||| || || ||||||||||||||| | ||||| |||||||    
T  18125283 tgttttaaattccacagctcagaatctcttacaaatatccatgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctagtggaa 18125382  T
Q  245 ctccttgacattttttcacaat 266  Q
    | ||||| ||||||||||||||    
T  18125383 ccccttggcattttttcacaat 18125404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 26329243 - 26329053
Alignment:
Q  43 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 142  Q
    |||||||||||| | |||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || ||  ||||||||||||||| ||       
T  26329243 taatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcatctttgt 26329144  T
Q  143 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcac 233  Q
    | ||   |||||||||||| |  || || || |  || | |||||||| ||||||||||||||| || || ||||||||||| ||||||||    
T  26329143 tttgccttaaattccatatttgggagtccctgacgaacttccacttatctaaatcaaattttgagaagagtgaacttcctaacgttttcac 26329053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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