View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_193 (Length: 273)
Name: NF10865A_low_193
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_193 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 29104378 - 29104116
Alignment:
| Q |
11 |
agaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaat |
110 |
Q |
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| T |
29104378 |
agaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaac |
29104279 |
T |
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| Q |
111 |
agcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattct |
210 |
Q |
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| T |
29104278 |
agcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattct |
29104179 |
T |
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| Q |
211 |
tccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctc |
273 |
Q |
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| T |
29104178 |
tccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctc |
29104116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 29090106 - 29089856
Alignment:
| Q |
22 |
ccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgtta |
121 |
Q |
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| T |
29090106 |
ccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaattcaacctctggtgtta |
29090007 |
T |
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| Q |
122 |
aatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagc |
221 |
Q |
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| T |
29090006 |
aatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgct |
29089907 |
T |
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| Q |
222 |
ggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatct |
272 |
Q |
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| T |
29089906 |
ggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatct |
29089856 |
T |
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