View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_194 (Length: 272)
Name: NF10865A_low_194
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_194 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 91 - 257
Target Start/End: Complemental strand, 32400312 - 32400140
Alignment:
| Q |
91 |
aatgaatatcgtatgtaaattttaaaaataaatgaatat---aatttatatatgcacactgat---tcggttctaaaatttaatttgatttgagtggttt |
184 |
Q |
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| T |
32400312 |
aatgaatatcgtatgtaaattttaaaaataaatgaatattataatttatatatgcacactgataattcggttctaaaatttaatttgatttgagtggttt |
32400213 |
T |
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| Q |
185 |
ccacaaaaggaaatccgaaaaattcaactatattttgttttatgtggatttcaaacttgtgtcggtatgtgat |
257 |
Q |
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| T |
32400212 |
ccacaaaaggaaatccgaaaaattcaactatattttgttttatgtggatttcaaacttgtgtcggtatgtgat |
32400140 |
T |
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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32400716 - 32400635
Alignment:
| Q |
1 |
gataataatggactggtagggcaatttcaattaaaaagcatacgatcttaggatgcattcatttaaaaaatatctcatgcaa |
82 |
Q |
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| T |
32400716 |
gataataatggactggtagggcaatttcaattaaaaaacatacgatcttaggatgcattcatttaaaaaatatctcatgcaa |
32400635 |
T |
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