View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_195 (Length: 271)
Name: NF10865A_low_195
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_195 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 28674559 - 28674317
Alignment:
| Q |
8 |
ttggtgttaatatccttatttccttttttagttccttgttttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaa |
107 |
Q |
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| T |
28674559 |
ttggtgttaatatccttatttccttttttagttccttgttttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaa |
28674460 |
T |
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| Q |
108 |
gtaaaggctcttggttattctttgtttgagttattatcagaagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaaagttatttc |
207 |
Q |
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| T |
28674459 |
gtaaaggctcttggttattctttgtttgagttattatcagaagctctaggtcttaatcgctttcaccttaaagaaatgggtggtgctgaaaagttttttc |
28674360 |
T |
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| Q |
208 |
ttgtgtgtcactattacccaccatgccctgagccagagttaac |
250 |
Q |
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| T |
28674359 |
tcttgtgtcactattacccaccatgccctgagccagagttaac |
28674317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 28639749 - 28639547
Alignment:
| Q |
48 |
ttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcag |
147 |
Q |
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| T |
28639749 |
ttgatgacttgctaatgataacaaacttgcagtgatattgtgaatgaatacacaaaagaagtaacggcacttggatcttctttgtatgagttattgtcag |
28639650 |
T |
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| Q |
148 |
aagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccctgagccagagtt |
247 |
Q |
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| T |
28639649 |
agtcacttggccttaatcgctttcaccttaaagaaatgggtgctgctgaaagttttttccatctatgtcattattatccaccatgccctgagccagagtt |
28639550 |
T |
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| Q |
248 |
aac |
250 |
Q |
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| T |
28639549 |
aac |
28639547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 28649056 - 28648854
Alignment:
| Q |
48 |
ttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcag |
147 |
Q |
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| T |
28649056 |
ttgatgacttgctaatgataacaaacttgcagtgatattgtgaatgaatacacaaaagaagtaacggcacttggatcttctttgtatgagttattgtcag |
28648957 |
T |
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| Q |
148 |
aagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccctgagccagagtt |
247 |
Q |
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| T |
28648956 |
agtctcttggccttaatcgctttcaccttaaagaaatgggtgctgctgaaagttttttccatctatgtcattattgtccaccatgccctgagccagagtt |
28648857 |
T |
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| Q |
248 |
aac |
250 |
Q |
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||| |
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| T |
28648856 |
aac |
28648854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 28670588 - 28670412
Alignment:
| Q |
75 |
tgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcagaagctccaggtcttaatcactttcacc |
174 |
Q |
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| T |
28670588 |
tgcagtgatattgttaatgaatacacaaaagaagtaatggcacttggatcttctttgtacgagttattgtcagaggctctcggtcttaaccgctctcacc |
28670489 |
T |
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| Q |
175 |
ttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccctgagccagagttaact |
251 |
Q |
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| T |
28670488 |
ttaaagaaatgggcgctgctgaaagttttgtacatctatgtcattattatccagcatgccctgagccggagttaact |
28670412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 28690846 - 28690670
Alignment:
| Q |
75 |
tgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcagaagctccaggtcttaatcactttcacc |
174 |
Q |
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| T |
28690846 |
tgcagagatattgtgattgaatactcagaaaaagtaatggtgtttgcttctacattgcttgagttattgtcagaagctctagggctaaacagatttcacc |
28690747 |
T |
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| Q |
175 |
ttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccctgagccagagttaact |
251 |
Q |
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| T |
28690746 |
ttaaagaaatggggtgtgctgaagggttgattgttctatgtcactattaccctccatgtcctgaacctgaattaact |
28690670 |
T |
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