View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_196 (Length: 271)
Name: NF10865A_low_196
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_196 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 2906417 - 2906165
Alignment:
| Q |
7 |
cattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctact |
106 |
Q |
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| T |
2906417 |
cattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctact |
2906318 |
T |
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| Q |
107 |
gctgttagaagccctcgtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgg |
206 |
Q |
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| T |
2906317 |
gctgttagaagccctcgtggtacaaaatccccttctcattcccctgttggtggcggcggtggagagcgtcgtgttcaattcggcacagttgtggaggtgg |
2906218 |
T |
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| Q |
207 |
gagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgatttt |
259 |
Q |
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| T |
2906217 |
gagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgatttt |
2906165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 2854389 - 2854137
Alignment:
| Q |
7 |
cattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctact |
106 |
Q |
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| T |
2854389 |
cattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctact |
2854290 |
T |
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| Q |
107 |
gctgttagaagccctcgtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgg |
206 |
Q |
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| T |
2854289 |
gctgttagaagccctcgtggtacaaaatccccttctcattcccctgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgg |
2854190 |
T |
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| Q |
207 |
gagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgatttt |
259 |
Q |
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| T |
2854189 |
gagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgatttt |
2854137 |
T |
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