View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_197 (Length: 271)
Name: NF10865A_low_197
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_197 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33064733 - 33064483
Alignment:
| Q |
1 |
tcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcaatgtttgtgcataacaacc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33064733 |
tcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcgatgtttgtgcataacaacc |
33064634 |
T |
|
| Q |
101 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33064633 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
33064534 |
T |
|
| Q |
201 |
aaatagaagctcatctttcttatctgaatttgtgattgaaattgttgttcc |
251 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
33064533 |
aaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttcc |
33064483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33066893 - 33066643
Alignment:
| Q |
1 |
tcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcaatgtttgtgcataacaacc |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33066893 |
tcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcgatgtttgtgcataacaacc |
33066794 |
T |
|
| Q |
101 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33066793 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
33066694 |
T |
|
| Q |
201 |
aaatagaagctcatctttcttatctgaatttgtgattgaaattgttgttcc |
251 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
33066693 |
aaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttcc |
33066643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33067979 - 33067729
Alignment:
| Q |
1 |
tcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcaatgtttgtgcataacaacc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33067979 |
tcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcgatgtttgtgcataacaacc |
33067880 |
T |
|
| Q |
101 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067879 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
33067780 |
T |
|
| Q |
201 |
aaatagaagctcatctttcttatctgaatttgtgattgaaattgttgttcc |
251 |
Q |
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|
||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
33067779 |
aaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttcc |
33067729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33063639 - 33063389
Alignment:
| Q |
1 |
tcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcaatgtttgtgcataacaacc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33063639 |
tcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaatggagatgcgatgtttgtgcataacaacc |
33063540 |
T |
|
| Q |
101 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063539 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
33063440 |
T |
|
| Q |
201 |
aaatagaagctcatctttcttatctgaatttgtgattgaaattgttgttcc |
251 |
Q |
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|
||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
33063439 |
aaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttcc |
33063389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33065820 - 33065570
Alignment:
| Q |
1 |
tcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcaatgtttgtgcataacaacc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33065820 |
tcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaatggagatgcgatgtttgtgcataacaacc |
33065721 |
T |
|
| Q |
101 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33065720 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
33065621 |
T |
|
| Q |
201 |
aaatagaagctcatctttcttatctgaatttgtgattgaaattgttgttcc |
251 |
Q |
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|
||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
33065620 |
aaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttcc |
33065570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33069031 - 33068781
Alignment:
| Q |
1 |
tcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcaatgtttgtgcataacaacc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
33069031 |
tcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcgatgtttgtgcataacaacc |
33068932 |
T |
|
| Q |
101 |
cagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33068931 |
cagttgagttggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatga |
33068832 |
T |
|
| Q |
201 |
aaatagaagctcatctttcttatctgaatttgtgattgaaattgttgttcc |
251 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33068831 |
aaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttcc |
33068781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 33070005 - 33069868
Alignment:
| Q |
114 |
ttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatgaaaatagaagctca |
213 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
33070005 |
ttgttatggtagatatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatgaaaatagaagttta |
33069906 |
T |
|
| Q |
214 |
tctttcttatctgaatttgtgattgaaattgttgttcc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33069905 |
tctttcttatctgaatttgtgattgaaattgttgttcc |
33069868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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