View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_204 (Length: 267)

Name: NF10865A_low_204
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_204
NF10865A_low_204
[»] chr8 (16 HSPs)
chr8 (1-104)||(40412120-40412223)
chr8 (170-214)||(40412289-40412333)
chr8 (214-257)||(4079022-4079065)
chr8 (214-255)||(21405594-21405635)
chr8 (214-255)||(21800086-21800127)
chr8 (215-255)||(10334463-10334503)
chr8 (215-255)||(26426649-26426689)
chr8 (215-255)||(29601007-29601047)
chr8 (215-255)||(33817382-33817422)
chr8 (215-255)||(34500962-34501002)
chr8 (215-255)||(37233774-37233814)
chr8 (214-255)||(10953464-10953505)
chr8 (214-255)||(10961469-10961510)
chr8 (223-255)||(14121777-14121809)
chr8 (215-255)||(33318002-33318042)
chr8 (40-92)||(2834472-2834524)
[»] chr7 (18 HSPs)
chr7 (211-255)||(7118022-7118066)
chr7 (212-255)||(47748788-47748831)
chr7 (213-255)||(27895367-27895409)
chr7 (214-255)||(19893365-19893406)
chr7 (215-255)||(6587465-6587505)
chr7 (215-255)||(16188859-16188899)
chr7 (215-255)||(29666256-29666296)
chr7 (215-255)||(38150675-38150715)
chr7 (215-255)||(46940310-46940350)
chr7 (215-255)||(1783844-1783884)
chr7 (215-255)||(3175869-3175909)
chr7 (215-255)||(7834977-7835017)
chr7 (215-255)||(23979785-23979825)
chr7 (223-255)||(28147340-28147372)
chr7 (215-255)||(32801511-32801551)
chr7 (215-255)||(36332873-36332913)
chr7 (220-255)||(38098226-38098261)
chr7 (220-255)||(44074043-44074078)
[»] chr2 (10 HSPs)
chr2 (212-255)||(45463421-45463464)
chr2 (215-255)||(4391932-4391972)
chr2 (215-255)||(25459352-25459392)
chr2 (220-255)||(16492706-16492741)
chr2 (220-255)||(28439661-28439696)
chr2 (215-253)||(34599445-34599483)
chr2 (215-255)||(12131254-12131294)
chr2 (215-255)||(15381685-15381725)
chr2 (215-255)||(5003333-5003373)
chr2 (215-255)||(38903640-38903680)
[»] chr1 (8 HSPs)
chr1 (212-255)||(40976882-40976925)
chr1 (214-255)||(13832942-13832983)
chr1 (215-255)||(29824484-29824524)
chr1 (215-255)||(37350404-37350444)
chr1 (215-255)||(40535784-40535824)
chr1 (222-255)||(31924771-31924804)
chr1 (215-255)||(7351173-7351213)
chr1 (215-255)||(42434411-42434451)
[»] chr6 (4 HSPs)
chr6 (214-255)||(23219288-23219329)
chr6 (215-255)||(14206867-14206907)
chr6 (215-255)||(31715630-31715670)
chr6 (220-255)||(4486501-4486536)
[»] chr4 (16 HSPs)
chr4 (214-255)||(13229507-13229548)
chr4 (40-96)||(759148-759204)
chr4 (215-255)||(1121198-1121238)
chr4 (215-255)||(1124034-1124074)
chr4 (215-255)||(21629708-21629748)
chr4 (215-255)||(32129544-32129584)
chr4 (215-255)||(50436106-50436146)
chr4 (215-255)||(56038367-56038407)
chr4 (220-255)||(26619456-26619491)
chr4 (220-255)||(46580555-46580590)
chr4 (215-257)||(575755-575797)
chr4 (215-255)||(53227862-53227902)
chr4 (220-255)||(48832773-48832808)
chr4 (42-84)||(31174124-31174166)
chr4 (214-255)||(6891256-6891297)
chr4 (215-255)||(43100270-43100310)
[»] chr3 (18 HSPs)
chr3 (214-255)||(14242639-14242680)
chr3 (214-255)||(26407149-26407190)
chr3 (214-255)||(53176035-53176076)
chr3 (215-255)||(10695682-10695722)
chr3 (40-96)||(36987450-36987506)
chr3 (40-96)||(37012889-37012945)
chr3 (215-255)||(38834333-38834373)
chr3 (216-255)||(39625640-39625679)
chr3 (214-255)||(52722331-52722372)
chr3 (211-255)||(10476117-10476161)
chr3 (215-255)||(40690797-40690837)
chr3 (215-255)||(54244854-54244894)
chr3 (220-255)||(8034261-8034296)
chr3 (212-255)||(38572645-38572688)
chr3 (212-255)||(43171863-43171906)
chr3 (220-255)||(45906339-45906374)
chr3 (46-95)||(52404508-52404557)
chr3 (215-255)||(52553608-52553648)
[»] chr5 (5 HSPs)
chr5 (215-255)||(3514189-3514229)
chr5 (215-255)||(19857991-19858031)
chr5 (215-255)||(21145598-21145638)
chr5 (215-255)||(25764077-25764117)
chr5 (220-255)||(22527329-22527364)
[»] scaffold0024 (1 HSPs)
scaffold0024 (40-89)||(70412-70461)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 40412120 - 40412223
Alignment:
Q  1 aaggcagggtttgattgccacttcttagttaaagaattaagacacacatataaattgaaaagattaaaagataaaataattgaataatgtgattaatata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40412120 aaggcagggtttgattgccacttcttagttaaagaattaagacacacatataaattgaaaagattcaaagataaaataattgaataatgtgattaatata 40412219  T
Q  101 tatc 104  Q
    ||||    
T  40412220 tatc 40412223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 40412289 - 40412333
Alignment:
Q  170 tgaaataagactttgtcgacggtacaagttactacctccagtaat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40412289 tgaaataagactttgtcgacggtacaagttactacctccagtaat 40412333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 4079065 - 4079022
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaattttgt 257  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  4079065 tcagggccgtcttaacaaattcataggcccggttttaattttgt 4079022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 21405594 - 21405635
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  21405594 tcagggccgtcttaacaaattcataggcccggttttaatttt 21405635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 21800086 - 21800127
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  21800086 tcagggccgtcttaacaaattcataggcccggttttaatttt 21800127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 10334463 - 10334503
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  10334463 cagggccgtcttaacaaattcataggcccggttttaatttt 10334503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 26426649 - 26426689
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  26426649 cagggccgtcttaacaaattcataggcccggttttaatttt 26426689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 29601007 - 29601047
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  29601007 cagggccgtcttaacaaattcataggcccggttttaatttt 29601047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 33817382 - 33817422
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  33817382 cagggccgtcttaacaaattcataggcccggttttaatttt 33817422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 34500962 - 34501002
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  34500962 cagggccgtcttaacaaattcataggcccggttttaatttt 34501002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 37233814 - 37233774
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  37233814 cagggccgtcttaacaaattcataggcccggttttaatttt 37233774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 10953464 - 10953505
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  10953464 tcagggccgtcttaataaattcataggcccggttttaatttt 10953505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 10961469 - 10961510
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  10961469 tcagggccgtcttaataaattcataggcccggttttaatttt 10961510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 14121777 - 14121809
Alignment:
Q  223 tcttaacaaattcataggcccggttttaatttt 255  Q
    |||||||||||||||||||||||||||||||||    
T  14121777 tcttaacaaattcataggcccggttttaatttt 14121809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 33318042 - 33318002
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  33318042 cagggccgtcttaacaaattcgtaggcccggttttaatttt 33318002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 2834524 - 2834472
Alignment:
Q  40 agacacacatataaattgaaaagattaaaagataaaataattgaataatgtga 92  Q
    |||||||||||||||||||||| ||||||  | ||| ||||||||| ||||||    
T  2834524 agacacacatataaattgaaaaaattaaagaagaaagtaattgaatgatgtga 2834472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 7118022 - 7118066
Alignment:
Q  211 taatcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  7118022 taatcaggaccgtcttaacaaattcataggtccggttttaatttt 7118066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 47748788 - 47748831
Alignment:
Q  212 aatcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  47748788 aatcagggccgtcttaacaaattcataggcccggttttaatttt 47748831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 27895409 - 27895367
Alignment:
Q  213 atcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  27895409 atcagggccgtcttaacaaattcataggcccggttttaatttt 27895367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 19893365 - 19893406
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  19893365 tcagggccgtcttaacaaattcataggcccggttttaatttt 19893406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 6587465 - 6587505
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6587465 cagggccgtcttaacaaattcataggcccggttttaatttt 6587505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 16188859 - 16188899
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  16188859 cagggccgtcttaacaaattcataggcccggttttaatttt 16188899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29666296 - 29666256
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  29666296 cagggccgtcttaacaaattcataggcccggttttaatttt 29666256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 38150715 - 38150675
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  38150715 cagggccgtcttaacaaattcataggcccggttttaatttt 38150675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 46940350 - 46940310
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  46940350 cagggccgtcttaacaaattcataggcccggttttaatttt 46940310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 1783884 - 1783844
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  1783884 cagggccgtcttaacaaattcatagacccggttttaatttt 1783844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 3175869 - 3175909
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  3175869 cagggccgtcttaacaaattcataggtccggttttaatttt 3175909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 7834977 - 7835017
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  7834977 cagggccgtcttaacaaattcataggtccggttttaatttt 7835017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 23979785 - 23979825
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  23979785 caggaccgtcttaacaaattcataggctcagttttaatttt 23979825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 28147372 - 28147340
Alignment:
Q  223 tcttaacaaattcataggcccggttttaatttt 255  Q
    |||||||||||||||||||||||||||||||||    
T  28147372 tcttaacaaattcataggcccggttttaatttt 28147340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 32801511 - 32801551
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  32801511 cagggccgttttaacaaattcataggcccggttttaatttt 32801551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 36332873 - 36332913
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  36332873 cagggccgtcttaacaaattcatagacccggttttaatttt 36332913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 38098226 - 38098261
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  38098226 ccgttttaacaaattcataggcccggttttaatttt 38098261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 44074078 - 44074043
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44074078 ccgtcttaacaaattcataggtccggttttaatttt 44074043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 45463421 - 45463464
Alignment:
Q  212 aatcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  45463421 aatcagggccgtcttaacaaattcataggcccggttttaatttt 45463464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 4391972 - 4391932
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  4391972 cagggccgtcttaacaaattcataggcccggttttaatttt 4391932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 25459352 - 25459392
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  25459352 cagggccgtcttaacaaattcataggcccggttttaatttt 25459392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 16492741 - 16492706
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||||||||||||||||||    
T  16492741 ccgtcttaacaaattcataggcccggttttaatttt 16492706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 28439661 - 28439696
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||||||||||||||||||    
T  28439661 ccgtcttaacaaattcataggcccggttttaatttt 28439696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 34599445 - 34599483
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatt 253  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  34599445 cagggccgtcttaacaaattcataggcccggttttaatt 34599483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 12131254 - 12131294
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  12131254 cagggccgtcttaacaaattcataggcccagttttaatttt 12131294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 15381685 - 15381725
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  15381685 cagggccgtcttaaaaaattcataggcccggttttaatttt 15381725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 5003333 - 5003373
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||| || |||||||||||    
T  5003333 cagggccgtcttaacaaattcataggtccagttttaatttt 5003373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 38903680 - 38903640
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||| |||||||||||| |||||||||||||    
T  38903680 cagggccgtcttaataaattcataggcacggttttaatttt 38903640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 40976882 - 40976925
Alignment:
Q  212 aatcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  40976882 aatcagggccgtcttaacaaattcataggcccggttttaatttt 40976925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 13832983 - 13832942
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  13832983 tcagggccgtcttaacaaattcataggcccggttttaatttt 13832942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29824524 - 29824484
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  29824524 cagggccgtcttaacaaattcataggcccggttttaatttt 29824484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 37350404 - 37350444
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  37350404 cagggccgtcttaacaaattcataggcccggttttaatttt 37350444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 40535824 - 40535784
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  40535824 cagggccgtcttaacaaattcataggcccggttttaatttt 40535784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 31924804 - 31924771
Alignment:
Q  222 gtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||||||||||||||||    
T  31924804 gtcttaacaaattcataggcccggttttaatttt 31924771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 7351173 - 7351213
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  7351173 cagggccgtcttaacaaattcataggctcggttttaatttt 7351213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 42434411 - 42434451
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  42434411 caggaccgtcttaacaaattcatacgcccgattttaatttt 42434451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 23219288 - 23219329
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  23219288 tcagggccgtcttaacaaattcataggcccggttttaatttt 23219329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 14206907 - 14206867
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  14206907 cagggccgtcttaacaaattcataggcccggttttaatttt 14206867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 31715670 - 31715630
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  31715670 cagggccgtcttaacaaattcataggcccggttttaatttt 31715630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 4486501 - 4486536
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||||||||||||||||||    
T  4486501 ccgtcttaacaaattcataggcccggttttaatttt 4486536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 13229507 - 13229548
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  13229507 tcagggccgtcttaacaaattcataggcccggttttaatttt 13229548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 759204 - 759148
Alignment:
Q  40 agacacacatataaattgaaaagattaaaagataaaataattgaataatgtgattaa 96  Q
    ||||||||| |||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  759204 agacacacacataaattgaaaaaattaaaaaagaaaataattgaatgatgtgattaa 759148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 1121198 - 1121238
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  1121198 cagggccgtcttaacaaattcataggcccggttttaatttt 1121238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 1124034 - 1124074
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  1124034 cagggccgtcttaacaaattcataggcccggttttaatttt 1124074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 21629748 - 21629708
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21629748 cagggccgtcttaacaaattcataggcccggttttaatttt 21629708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 32129584 - 32129544
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  32129584 cagggccgtcttaacaaattcataggcccggttttaatttt 32129544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 50436146 - 50436106
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  50436146 cagggccgtcttaacaaattcataggcccggttttaatttt 50436106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 56038407 - 56038367
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  56038407 cagggccgtcttaacaaattcataggcccggttttaatttt 56038367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 26619491 - 26619456
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||||||||||||||||||    
T  26619491 ccgtcttaacaaattcataggcccggttttaatttt 26619456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 46580590 - 46580555
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||||||||||||||||||    
T  46580590 ccgtcttaacaaattcataggcccggttttaatttt 46580555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 575755 - 575797
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaattttgt 257  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  575755 cagggccgtcttaacaaattaataggcccggttttaattttgt 575797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 53227862 - 53227902
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  53227862 cagggccgtcttaacaaattcataggtccggttttaatttt 53227902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 48832773 - 48832808
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||| ||||||||||||||    
T  48832773 ccgtcttaacaaattcataggtccggttttaatttt 48832808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 31174166 - 31174124
Alignment:
Q  42 acacacatataaattgaaaagattaaaagataaaataattgaa 84  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||    
T  31174166 acacacacataaattgaaaaaattaaaagagaaaataattgaa 31174124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 6891297 - 6891256
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||    
T  6891297 tcagggccgtcttaacaaatttataggtccggttttaatttt 6891256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 43100270 - 43100310
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  43100270 cagggccgtcttaacaaattcataggcccaattttaatttt 43100310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 14242639 - 14242680
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  14242639 tcagggccgtcttaacaaattcataggcccggttttaatttt 14242680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 26407190 - 26407149
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  26407190 tcagggccgtcttaacaaattcataggcccggttttaatttt 26407149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 53176076 - 53176035
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  53176076 tcagggccgtcttaacaaattcataggcccggttttaatttt 53176035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 10695682 - 10695722
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  10695682 cagggccgtcttaacaaattcataggcccggttttaatttt 10695722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 36987450 - 36987506
Alignment:
Q  40 agacacacatataaattgaaaagattaaaagataaaataattgaataatgtgattaa 96  Q
    ||||||||| |||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  36987450 agacacacacataaattgaaaaaattaaaaaagaaaataattgaatgatgtgattaa 36987506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 37012889 - 37012945
Alignment:
Q  40 agacacacatataaattgaaaagattaaaagataaaataattgaataatgtgattaa 96  Q
    ||||||||| |||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  37012889 agacacacacataaattgaaaaaattaaaaaagaaaataattgaatgatgtgattaa 37012945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 38834333 - 38834373
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  38834333 cagggccgtcttaacaaattcataggcccggttttaatttt 38834373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 39625679 - 39625640
Alignment:
Q  216 aggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  39625679 aggaccgtcttaacaaattcaaaggcccggttttaatttt 39625640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 52722331 - 52722372
Alignment:
Q  214 tcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  52722331 tcagggccgtcttaacaaattcataggcccagttttaatttt 52722372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 10476161 - 10476117
Alignment:
Q  211 taatcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||    
T  10476161 taatcagggccgtcataataaattcataggcccggttttaatttt 10476117  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 40690837 - 40690797
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  40690837 cagggccgtcttaacaaattcataggcccgattttaatttt 40690797  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 54244854 - 54244894
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  54244854 cagggccgtcttaacaaattcataggtccggttttaatttt 54244894  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 8034261 - 8034296
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8034261 ccgtcttaacaaattcataggtccggttttaatttt 8034296  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 38572645 - 38572688
Alignment:
Q  212 aatcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||    
T  38572645 aatcagggccgtcttaacaaattcatagtccccgttttaatttt 38572688  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 43171906 - 43171863
Alignment:
Q  212 aatcaggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||    
T  43171906 aatcaggatcgtcttaacaaatttataggcccgattttaatttt 43171863  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 45906374 - 45906339
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    ||||||||||||||||||||| ||||||||||||||    
T  45906374 ccgtcttaacaaattcataggtccggttttaatttt 45906339  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 52404557 - 52404508
Alignment:
Q  46 acatataaattgaaaagattaaaagataaaataattgaataatgtgatta 95  Q
    ||||||||||| |||| ||||||||||||||||||  ||| |||||||||    
T  52404557 acatataaattaaaaaaattaaaagataaaataataaaattatgtgatta 52404508  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 52553648 - 52553608
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||||||||||||||||||||||||  |||||||||    
T  52553648 cagggccgtcttaacaaattcataggcccgactttaatttt 52553608  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 3514189 - 3514229
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  3514189 cagggccgtcttaacaaattcataggcccggttttaatttt 3514229  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 19857991 - 19858031
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  19857991 cagggccgtcttaacaaattcataggcccggttttaatttt 19858031  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 21145598 - 21145638
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21145598 caggcccgtcttaacaaattcataggcccggttttaatttt 21145638  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 25764077 - 25764117
Alignment:
Q  215 caggaccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  25764077 cagggccgtcttaacaaattcataggcccggttttaatttt 25764117  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 22527329 - 22527364
Alignment:
Q  220 ccgtcttaacaaattcataggcccggttttaatttt 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  22527329 ccgttttaacaaattcataggcccggttttaatttt 22527364  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 70461 - 70412
Alignment:
Q  40 agacacacatataaattgaaaagattaaaagataaaataattgaataatg 89  Q
    |||||| || ||||||||| || ||||||||| |||||||||||||||||    
T  70461 agacacgcacataaattgataaaattaaaagagaaaataattgaataatg 70412  T

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