View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_207 (Length: 266)
Name: NF10865A_low_207
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_207 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 20816553 - 20816289
Alignment:
| Q |
1 |
gagctcgagggttataagccttctgcttagccaatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgatac |
100 |
Q |
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| T |
20816553 |
gagctcgagggttataaaccttctgcttagccaatccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgatac |
20816454 |
T |
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| Q |
101 |
caaaatcttccttccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816453 |
caaaatcttccttccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggt |
20816354 |
T |
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| Q |
201 |
acaactttcacagggcccaccgtgtccccccgaattgaaacttcattggatattcttcgacatgc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| |
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| T |
20816353 |
acaactttcacagggcccaccgtgtccccccgaattgcaacttcattggatattttgcgacatgc |
20816289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 38779595 - 38779821
Alignment:
| Q |
4 |
ctcgagggttataagccttctgcttagccaatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaa |
103 |
Q |
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||||||||||||| ||||||||||||| |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
38779595 |
ctcgagggttatagaccttctgcttagcaaatccaggatcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccac |
38779694 |
T |
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| Q |
104 |
aatcttccttccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtaca |
203 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| || || || |
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| T |
38779695 |
aatcttccttccaggggggcctccctccttaactggaggtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacg |
38779794 |
T |
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| Q |
204 |
actttcacagggcccaccgtgtccccc |
230 |
Q |
| |
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||||||||||||||||| ||||||| |
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| T |
38779795 |
gctttcacagggcccacctggtccccc |
38779821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 33388562 - 33388771
Alignment:
| Q |
12 |
ttataagccttctgcttagccaatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttcc |
111 |
Q |
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|||||| |||||||||| || ||||||||||||| |||||| ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| | |
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| T |
33388562 |
ttataaaccttctgcttggcaaatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttc |
33388661 |
T |
|
| Q |
112 |
ttccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcac |
211 |
Q |
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||||||| ||||||||||| |||||||||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || |||||||| |
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| T |
33388662 |
ttccagggaggcctccctccttaactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcac |
33388761 |
T |
|
| Q |
212 |
agggcccacc |
221 |
Q |
| |
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|||||||||| |
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| T |
33388762 |
agggcccacc |
33388771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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