View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_21 (Length: 438)
Name: NF10865A_low_21
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 23 - 432
Target Start/End: Complemental strand, 38145626 - 38145217
Alignment:
| Q |
23 |
caacacctaagcttgtgcacaggcctgcagggtaaccaagaacagaacttttctcgtatattctgtaatagacttcaccgatcgcggcaccggcttgaac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |
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| T |
38145626 |
caacacctaagcttgtgcacaggcctgcagggtaaccaagaacagaacttttctcgtatattctgtaatagacttcaccgatagtggcaccggattgaac |
38145527 |
T |
|
| Q |
123 |
ccaagcagtgttggttttagtgtcgatgcttctgccgcgaagtttgattaaatcgacaactatgaaaggtgtttcgattttggaaacatatgaaagtcct |
222 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38145526 |
ccaagcagtgttggttttagtgtcgatgcttatgccgcgaagtttgattaaatcgacaactatgaaaggtgtttcgattttggaaacatatgaaagtcct |
38145427 |
T |
|
| Q |
223 |
tcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaata |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38145426 |
tcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaata |
38145327 |
T |
|
| Q |
323 |
tgaattcgggtttcggtgtagatggtgccgaacaccttaggttcattgctaaggaatcaaggatggttgcgaacgaaggttcatttggagtgtaaattgt |
422 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38145326 |
tgaattcgggtttcggtgtagatggtgccaaacaccttaggttcattgctaaggaatcaaggatggttgcgaatgaaggttcatttggagtgtaaattgt |
38145227 |
T |
|
| Q |
423 |
tgtatgaaat |
432 |
Q |
| |
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|||||||||| |
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| T |
38145226 |
tgtatgaaat |
38145217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 335
Target Start/End: Original strand, 11787329 - 11787506
Alignment:
| Q |
158 |
cgcgaagtttgattaaatcgacaactatgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttagatg |
257 |
Q |
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||||||||||| || ||||| | ||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11787329 |
cgcgaagtttggctaggtcgacgattatgaaaggcgtttcgatttcggaaacatatgagagtccttcataatcatggccaccacttcttactcttagatg |
11787428 |
T |
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| Q |
258 |
gattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggttt |
335 |
Q |
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|| ||||||||||| || ||| | || ||| |||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
11787429 |
aataccaagtttctttgaacaagtaacagctacttggacatgtgaatcggttaagggtgtgaatatgaattcgggttt |
11787506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 11787194 - 11787299
Alignment:
| Q |
23 |
caacacctaagcttgtgcacaggcctgcagggtaaccaagaacagaacttttctcgtatattctgtaatagacttcaccgatcgcggcaccggcttgaac |
122 |
Q |
| |
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|||||||||| |||||||| || || |||||| ||||| ||||| ||||||||| | |||||| ||||| ||||| ||||| | ||||||||||||| |
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| T |
11787194 |
caacacctaaacttgtgcaaagaccagcagggaaaccatgaacatcacttttctcatgtattctataataaacttcgccgatagtagcaccggcttgaat |
11787293 |
T |
|
| Q |
123 |
ccaagc |
128 |
Q |
| |
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|||||| |
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|
| T |
11787294 |
ccaagc |
11787299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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