View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_211 (Length: 265)
Name: NF10865A_low_211
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_211 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 15944345 - 15944109
Alignment:
| Q |
9 |
aatattagagtgaaagaaaagaaagtgaacaagttgtagaagacaaataaactaacagagccctgatttaagaaatatcacacaccttgtaaaacttgct |
108 |
Q |
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| T |
15944345 |
aatattagagtgaaagaaaagaaagtgaacaagttgtagaagacaaataaactaacagagccctgatttaagaaatatcacacaccttgtaaaacttgct |
15944246 |
T |
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| Q |
109 |
ttttgcaataacttcgttcatcacttccttcttggttttatgtctctgtaggataagtcaccagtcagaaacagcttcaaagcattttaaataaagtgat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15944245 |
ttttgcaataacttcgttcatcacttccttcttggttttatgtctctgtaggataagtcaccagtcagaaacagcttcaaagcattttaaataaagtgat |
15944146 |
T |
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| Q |
209 |
atttgtgaaaagtttaaaaaggaattgatatcaagac |
245 |
Q |
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| T |
15944145 |
atttgtgaaaagtttaaaaaggaattgatatcaagac |
15944109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 28289226 - 28288990
Alignment:
| Q |
9 |
aatattagagtgaaagaaaagaaagtgaacaagttgtagaagacaaataaactaacagagccctgatttaagaaatatcacacaccttgtaaaacttgct |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28289226 |
aatattagagtgaaagaaaagaaagtgaacaagttgtagaagacaaataaactaacagagccctgatttaagaaatatcgcacaccttgtaaaacttgct |
28289127 |
T |
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| Q |
109 |
ttttgcaataacttcgttcatcacttccttcttggttttatgtctctgtaggataagtcaccagtcagaaacagcttcaaagcattttaaataaagtgat |
208 |
Q |
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| T |
28289126 |
ttttgcaataacttcgttcatcacttccttcttggttttatgtctctgtaggataagtcaccagtcagaaacagcttcaaagcattttaaataaagtgac |
28289027 |
T |
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| Q |
209 |
atttgtgaaaagtttaaaaaggaattgatatcaagac |
245 |
Q |
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| T |
28289026 |
atttgtgaaaaatttaaaaaggaattgatatcgagac |
28288990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 15935875 - 15935677
Alignment:
| Q |
9 |
aatattagagtgaaagaaaagaaagtgaacaagttgtagaagacaaataaactaacagagccctgatttaagaaatatcacacaccttgtaaaacttgct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15935875 |
aatattagagtgaaagaaaagaaagtgaacaagttgtagaagacaaataaactaacagagccctgatttaagaaatatcacacaccttgtaaaacttgct |
15935776 |
T |
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| Q |
109 |
ttttgcaataacttcgttcatcacttccttcttggttttatgtctctgtaggataagtcaccagtcagaaacagcttcaaagcattttaaataaagtga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15935775 |
ttttgcaataacttcgttcatcacttccttcttggttttatgtctctgtaggataagtcaccagtcagaaacagcttcaaagcattttaaataaagtga |
15935677 |
T |
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