View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_212 (Length: 265)

Name: NF10865A_low_212
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_212
NF10865A_low_212
[»] chr5 (7 HSPs)
chr5 (36-251)||(38447081-38447296)
chr5 (74-251)||(38180615-38180792)
chr5 (74-251)||(38190339-38190516)
chr5 (74-251)||(38207839-38208016)
chr5 (74-251)||(38217564-38217741)
chr5 (74-251)||(38455975-38456152)
chr5 (74-196)||(26033464-26033586)
[»] chr1 (2 HSPs)
chr1 (38-251)||(38342378-38342593)
chr1 (38-251)||(38446571-38446786)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 38447296 - 38447081
Alignment:
Q  36 gaaagtaaaacatgaacaaaaatacctcgcgagcgattttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttcttt 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38447296 gaaagtaaaacatgaacaaaaatacctcgcgagcgattttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttcttt 38447197  T
Q  136 actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447196 actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg 38447097  T
Q  236 tcccaatttctggttc 251  Q
    ||||||||||||||||    
T  38447096 tcccaatttctggttc 38447081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 251
Target Start/End: Complemental strand, 38180792 - 38180615
Alignment:
Q  74 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 173  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38180792 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38180693  T
Q  174 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttc 251  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| ||||||||||||||    
T  38180692 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttc 38180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 251
Target Start/End: Original strand, 38190339 - 38190516
Alignment:
Q  74 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 173  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38190339 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38190438  T
Q  174 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttc 251  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| ||||||||||||||    
T  38190439 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttc 38190516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 251
Target Start/End: Complemental strand, 38208016 - 38207839
Alignment:
Q  74 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 173  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38208016 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38207917  T
Q  174 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttc 251  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| ||||||||||||||    
T  38207916 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttc 38207839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 251
Target Start/End: Original strand, 38217564 - 38217741
Alignment:
Q  74 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 173  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38217564 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38217663  T
Q  174 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttc 251  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| ||||||||||||||    
T  38217664 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttc 38217741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 251
Target Start/End: Complemental strand, 38456152 - 38455975
Alignment:
Q  74 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 173  Q
    ||||||||||||||| ||||||||||  ||   |||| ||| ||||||  || |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38456152 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 38456053  T
Q  174 tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttc 251  Q
    |||||||||| | ||| |||||| | ||| |  ||  ||| || |  || ||||||||||||| ||||||||||||||    
T  38456052 tataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttc 38455975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 26033464 - 26033586
Alignment:
Q  74 ttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 173  Q
    ||||||||||||||| |||||||||| |||   |||  ||| |||||  |||||||||||| |||||||||||||||||| ||| | |||   |||| ||    
T  26033464 ttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgat 26033563  T
Q  174 tataccatctaaaacggcaactt 196  Q
    |||||||||| | ||| ||||||    
T  26033564 tataccatcttagacgacaactt 26033586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 251
Target Start/End: Complemental strand, 38342593 - 38342378
Alignment:
Q  38 aagtaaaacatgaacaaaaata--cctcgcgagcgattttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttcttt 135  Q
    ||||||| ||||||||||||||  ||||| |||| || ||||||||||||||  ||||| ||||   |  ||||| ||||| ||| | ||||||||||||    
T  38342593 aagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttcttt 38342494  T
Q  136 actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg 235  Q
     ||||||||||||||| ||| | |||||| |||  |||||||||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||     
T  38342493 gctaaatggaccctttcttaaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctct 38342394  T
Q  236 tcccaatttctggttc 251  Q
    | |||||||| |||||    
T  38342393 ttccaatttccggttc 38342378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 251
Target Start/End: Complemental strand, 38446786 - 38446571
Alignment:
Q  38 aagtaaaacatgaacaaaaata--cctcgcgagcgattttagaccatttgaatccaccatacttcttacgtaactgaaagactttattttcttcttcttt 135  Q
    ||||||| ||||||||||||||  ||||| |||| || ||||||||||||||  ||||| ||||   |  ||||| ||||| ||| | ||||||||||||    
T  38446786 aagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttcttt 38446687  T
Q  136 actaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcg 235  Q
     ||||||||||||||| ||| | |||||| |||  |||||||||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||     
T  38446686 gctaaatggaccctttcttaaatcaggtcgtagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctct 38446587  T
Q  236 tcccaatttctggttc 251  Q
    | |||||||| |||||    
T  38446586 ttccaatttccggttc 38446571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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