View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_220 (Length: 261)
Name: NF10865A_low_220
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_220 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 48439114 - 48438868
Alignment:
| Q |
9 |
tggtgttcataccttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtacacttttgtgnnnnnnnnnnagtt |
108 |
Q |
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| T |
48439114 |
tggtgttcataccttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtacacttttgtgttttttttttagtt |
48439015 |
T |
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| Q |
109 |
ttgtataagttactagcaagtgttttctcaatttgatttattcgacgactctagactatatggactaatctttggatattatttgattggcttctattag |
208 |
Q |
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| T |
48439014 |
ttgtataagttactagcaagtgttttcttaatttgatttattcgacgactctagactatatggactaatctttggatattatttgattggattctattag |
48438915 |
T |
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| Q |
209 |
gtgttgacatcaattggaaacttctgtatctgctccattgcagtagg |
255 |
Q |
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| T |
48438914 |
gtgttgacatcaattggaaacttctgtatctgctccattgcagtagg |
48438868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 44530519 - 44530594
Alignment:
| Q |
9 |
tggtgttcataccttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggta |
84 |
Q |
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| T |
44530519 |
tggtgttcatacctttttcggtaaagctgctcaccttgtagatactacaaaccaagttggtcacttccaacaggta |
44530594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 21982647 - 21982572
Alignment:
| Q |
9 |
tggtgttcataccttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggta |
84 |
Q |
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| T |
21982647 |
tggtgtccacaccttctttgggaaggctgcacaccttgttgatagcaccaacaatgttggtcacttccaaaaggta |
21982572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 21982307 - 21982262
Alignment:
| Q |
204 |
attaggtgttgacatcaattggaaacttctgtatctgctccattgc |
249 |
Q |
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| T |
21982307 |
attaggtgttgacatccattggtaacttctgtatctgctcaattgc |
21982262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 45199554 - 45199478
Alignment:
| Q |
9 |
tggtgttcataccttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtac |
85 |
Q |
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| T |
45199554 |
tggtgtgcacaccttctttggtaaggctgctcatttggtcgacagcactaaccaagttggtcatttccaaaaggtac |
45199478 |
T |
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