View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_231 (Length: 255)
Name: NF10865A_low_231
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_231 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 30267328 - 30267079
Alignment:
| Q |
6 |
attgtgtctccacattaggtgctgcagcagatatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacatcacactttttcc |
105 |
Q |
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| T |
30267328 |
attgtgtctccacattaggtgctgcagcagatatcatacaaatcaaagactgccattggttccttcctaacgaatcaccaacaaacatcacactttttcc |
30267229 |
T |
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| Q |
106 |
tttcatcttcaacaaaaactcaactccattgaacctaccattacaaaac-----------accatcattcaaattatactaagcaaccacacactacatt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
30267228 |
tttcatcttcaacaaaaactcaactccattgaacctgccattacaaaacaccacaaaaacaccatcattcaaattatactaagcaaccacacacta---t |
30267132 |
T |
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| Q |
195 |
atcttaaaaacacaatattttgctatgaagcacaaacccaaacacgaacacca |
247 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30267131 |
atcttaaaaacactatattttgctatgaagcacaaacccaaacacgaacacca |
30267079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 29365262 - 29365395
Alignment:
| Q |
10 |
tgtctccacattaggtgctgcagcagatatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacatcacactttttcctttc |
109 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
29365262 |
tgtctccacacgaggtgctgcagcagatatcatataaatcaaagactgccattggttccttcctaacgaatcaccaacaaacatcacattttttcctttc |
29365361 |
T |
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| Q |
110 |
atcttcaacaaaaactcaactccattgaacctac |
143 |
Q |
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| T |
29365362 |
atcttcatcagaaactcaactccgttgaacctac |
29365395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 25959326 - 25959220
Alignment:
| Q |
36 |
atatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacatcacactttttcctttcatcttcaacaaaaactcaactccatt |
135 |
Q |
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|||||||||||||||| || | |||||| ||||| ||||| ||||||||||||||||| | ||||||||| ||||| || || ||||| ||||||||| |
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| T |
25959326 |
atatcatacaaatcaatgattcccattgattcctccccaaagaatcaccaacaaacattatactttttcccttcattcccatcagaaactgaactccatt |
25959227 |
T |
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| Q |
136 |
gaaccta |
142 |
Q |
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||||||| |
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| T |
25959226 |
gaaccta |
25959220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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