View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_233 (Length: 254)
Name: NF10865A_low_233
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_233 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 31506900 - 31506658
Alignment:
| Q |
6 |
gtatcagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggca |
105 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506900 |
gtatcagagatcttatttatgaatgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggca |
31506801 |
T |
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| Q |
106 |
gggtcactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506800 |
gggtcactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctag |
31506701 |
T |
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| Q |
206 |
tcccagttggaaatactattgtccttagagctagagcaatgtc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506700 |
tcccagttggaaatactattgtccttagagctagagcaatgtc |
31506658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 34495859 - 34496101
Alignment:
| Q |
6 |
gtatcagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggca |
105 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34495859 |
gtatcagagatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggca |
34495958 |
T |
|
| Q |
106 |
gggtcactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctag |
205 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34495959 |
gggtcactgtcggcaacaataccagcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctag |
34496058 |
T |
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| Q |
206 |
tcccagttggaaatactattgtccttagagctagagcaatgtc |
248 |
Q |
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| T |
34496059 |
tcccagttggaaatactattgtccttagagctagagcaatgtc |
34496101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 27607406 - 27607648
Alignment:
| Q |
6 |
gtatcagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggca |
105 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27607406 |
gtatcagagatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggca |
27607505 |
T |
|
| Q |
106 |
gggtcactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctag |
205 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27607506 |
gggtcactgtcggcaacaatacctgcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctag |
27607605 |
T |
|
| Q |
206 |
tcccagttggaaatactattgtccttagagctagagcaatgtc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
27607606 |
tcccagttggaaatactattgtccttagagctagagctatgtc |
27607648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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