View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_238 (Length: 252)
Name: NF10865A_low_238
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_238 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 32248348 - 32248443
Alignment:
| Q |
23 |
tatcaaaatctagttaagagttaatttggcccaacagcttgtccagttaatatcataaaggatggctacacagatggaatccaggtcatgacaatc |
118 |
Q |
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| T |
32248348 |
tatcaaaatctagttaagagttaatttggcctaacagcttgtccagttaatatcataaaggatggctacacagatggaatccaggtcatgacaatc |
32248443 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 2488840 - 2488806
Alignment:
| Q |
87 |
gctacacagatggaatccaggtcatgacaatcaag |
121 |
Q |
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| T |
2488840 |
gctacacagatggaatccaggtcatgacaatcaag |
2488806 |
T |
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