View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_242 (Length: 251)
Name: NF10865A_low_242
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_242 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 45217398 - 45217607
Alignment:
| Q |
21 |
ttagtgaacagacaaaaatttaagacacaatattgaatatgacatgaatggtaaaaacacttagagtttgagggacaaatcaagcttctgcaactcctct |
120 |
Q |
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| T |
45217398 |
ttagtgaacagacaaaaatttaagacacaatattgaatatgacatgaatggtaaaaacacttagagtttgagggacaagtcaagcttctgcaactcctct |
45217497 |
T |
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| Q |
121 |
tgtttattcttcaaacttgtaacattataacctccaaatacattttgcacctttcttggagaaaatttccctgatcttgtaggtatggcactagtcaagg |
220 |
Q |
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| T |
45217498 |
tgtttattcttcaaacttgtaacattataacctccaaatccattttgcacctttcttggagaaaatttccctgatcttgtaggtatggcactagtcaagg |
45217597 |
T |
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| Q |
221 |
atgatgatcc |
230 |
Q |
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| T |
45217598 |
atgatgatcc |
45217607 |
T |
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