View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_243 (Length: 251)
Name: NF10865A_low_243
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_243 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 37013033 - 37013279
Alignment:
| Q |
9 |
ataagattaatttcatttgttaagatttgagaatagaagtttgaaatcacttatcaannnnnnnnnngaaggagccttataagtatgatgacaccc-gtg |
107 |
Q |
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| T |
37013033 |
ataagattactttcatttgttaagatttgagaacagaagtttgaaattacttatcaattttttttttgaaggagccttataagtatgatgacaccccgtg |
37013132 |
T |
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| Q |
108 |
atctatatcttctatatagaatattttgaaaggatcaatgttatat--------atttgtaaaatataaagnnnnnnn--gcaatgataaaaaatggttg |
197 |
Q |
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| T |
37013133 |
atctatatct---atatagaatattttgaaaggatcaatgttatatggatatatatttgtaaaatataaagtttttttttgcaatgataaaaaatggttg |
37013229 |
T |
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| Q |
198 |
caaagaaaatcttatcccatgaacgtggcgctgacatatattcttcgaca |
247 |
Q |
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| T |
37013230 |
caaagaaaatcttatcccatggacgtggcgctgacatatatacttggaca |
37013279 |
T |
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