View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_248 (Length: 250)
Name: NF10865A_low_248
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_248 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 42266432 - 42266650
Alignment:
| Q |
17 |
acaactaaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttcctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42266432 |
acaactaaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttcctt |
42266531 |
T |
|
| Q |
117 |
gaatacttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggtttgnnnnnnnc |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42266532 |
gaatacttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggtttgtttttttc |
42266631 |
T |
|
| Q |
217 |
attcaccttgaaactttat |
235 |
Q |
| |
|
||||||||||||||||||| |
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| T |
42266632 |
attcaccttgaaactttat |
42266650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 42257844 - 42258056
Alignment:
| Q |
23 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42257844 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgcatcagaagtgtgtccaactgttgatgcaatcagagctttccttgaatac |
42257943 |
T |
|
| Q |
123 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggtttgnnnnnnncattcac |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42257944 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggtttatttttttcattcac |
42258043 |
T |
|
| Q |
223 |
cttgaaactttat |
235 |
Q |
| |
|
||||||||||||| |
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| T |
42258044 |
cttgaaactttat |
42258056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 42278434 - 42278618
Alignment:
| Q |
23 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatac |
122 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
42278434 |
aaactatagacagttattggatttttgaaaatcagattcaaacatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaatac |
42278533 |
T |
|
| Q |
123 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggttt |
207 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
42278534 |
ttggtagatccattactgcaagaagatcattctaccaatgatgatcttccattatcacaacatgaaaaagttgcaaaacaggttt |
42278618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 42252353 - 42252562
Alignment:
| Q |
23 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||| |
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| T |
42252353 |
aaactatagacaattattggatttttgaaaattagattcaaacatggatgcatcaaca---tgtccaactgctgatgcaatcagagctttccttgaatac |
42252449 |
T |
|
| Q |
123 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggtttgnnnnnnncattcac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42252450 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggtttgtttttttcattcac |
42252549 |
T |
|
| Q |
223 |
cttgaaactttat |
235 |
Q |
| |
|
|||| |||||||| |
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|
| T |
42252550 |
cttgcaactttat |
42252562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 7691743 - 7691926
Alignment:
| Q |
23 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatac |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
7691743 |
aaactatagtcaattattggatttttgaaaatcagattcaaacatggatgtatcagaactgtgtccaactgttgaattaatcagagctttccttgaatac |
7691842 |
T |
|
| Q |
123 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggtt |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
7691843 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccattatcacaacatgaaaaagttgcaaaacaggtt |
7691926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 42283953 - 42284137
Alignment:
| Q |
23 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatac |
122 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42283953 |
aaaccatagtcaattattggatttttgaaaatcagattcaaacatggatgtattagaagtgtgtccaactgttgatgcaatcagagctttccttgaatac |
42284052 |
T |
|
| Q |
123 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggttt |
207 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
42284053 |
ttggtagatcgattactgcaagaagataattctaccaatgatgatcttccacaatcacaacatgaaaaagatgcaaaccaggttt |
42284137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 42270926 - 42271110
Alignment:
| Q |
23 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatac |
122 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||||||| || | |||| |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42270926 |
aaaccatagtcaagtattggatttttgaaaatcagattcaaacattgacggatcaaaagtgtgtccaactgttgatgcaatcagagctttccttgaatac |
42271025 |
T |
|
| Q |
123 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggttt |
207 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
42271026 |
ttggtagatccattactgcaagaagataattctaccaatgatgatcttccacaatcacaacatgaaaaagatgcaaaccaggttt |
42271110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 486704 - 486888
Alignment:
| Q |
23 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatac |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
486704 |
aaactatagacagttattggatttttgaaaatcagattcaaacatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaatac |
486803 |
T |
|
| Q |
123 |
ttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaaaagttgcaaaccaggttt |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
486804 |
ttggtagatccattactgcaagaagatcattctaccaatgatgatcttccattatcacaacatgaaaaagttgcaaaacaggttt |
486888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 495226 - 495383
Alignment:
| Q |
32 |
acaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatacttggtagat |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
495226 |
acaattattggatttttgaaaatcagattcaaacatggatgtatcagaactgtgtccaactgttgatgcaatcagagctttccttgaatacttggtagat |
495325 |
T |
|
| Q |
132 |
ccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaacatgaaa |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
495326 |
ccattgctgcaagaagatcattctaccaatgatgatcttccattatcacaacatgaaa |
495383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 30714106 - 30713983
Alignment:
| Q |
84 |
tgtccaactgttgatgcaatcagagctttccttgaatacttggtagatccattgctgcaagaagatcattctaccaatgatgatcttccactatcacaac |
183 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| || |||||| ||||||| ||| ||| ||| |||| |||||| || ||||| |||||||| |
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| T |
30714106 |
tgtccaactgttcatgcaatcggatctttccttgagtatttggtatctccattgttgcgagaggatgattcctacaatgacaatgttccaacatcacaac |
30714007 |
T |
|
| Q |
184 |
atgaaaaagttgcaaaccaggttt |
207 |
Q |
| |
|
| |||||||||||||| ||||||| |
|
|
| T |
30714006 |
acgaaaaagttgcaaaacaggttt |
30713983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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