View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_262 (Length: 249)
Name: NF10865A_low_262
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_262 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 28275388 - 28275605
Alignment:
| Q |
20 |
caactttgtggtccacttggagggcctgttttgacttcattttttctggggtggtaccaaaagtggatgaggtcgttgatactattaaaaatgtttcttg |
119 |
Q |
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| T |
28275388 |
caactttgtggtccatttggagggcgtgttttgacttcattttttctggggtggtaccaaaagtggatgaggtcgttgatactattaaaaatgtttcttg |
28275487 |
T |
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| Q |
120 |
gctccaaagaaaagagctccttgtctctattatgagtggtttataaacgcttttgattgtatgtgtaatttaaagtttttggcatctacttgcacttata |
219 |
Q |
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| T |
28275488 |
gctccaaagaaaagagctccttgtctctattatgagtggtttataaacgcttttgattgtatgtgtaatttcaagtttttggcatctacttgcacttata |
28275587 |
T |
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| Q |
220 |
ttcattaatcaatatatt |
237 |
Q |
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|||||||||||||||||| |
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| T |
28275588 |
ttcattaatcaatatatt |
28275605 |
T |
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