View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_272 (Length: 248)
Name: NF10865A_low_272
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_272 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 32247836 - 32248037
Alignment:
| Q |
15 |
aagcatcaggctcaactcagagatttgcgctttgaaccttgccgacatcgaagccctgttatcgttagggtttcattgtttcagaatactatttttggtt |
114 |
Q |
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| T |
32247836 |
aagcatcaggctcaactcagagatttgcgctttgaaccttgccgacatcgaagccctgttgtcgttagggtttcattgtttcagaatactatttttggtt |
32247935 |
T |
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| Q |
115 |
aacttatctcgttttgtcgtttgagtgtaatgtgtgggagaggagtcttttggttactaaaagcaatgcactctcacacgttaaatgggcttatcggaca |
214 |
Q |
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| T |
32247936 |
aacttatctcgttttgtcgtttgagtgtaatgtgtgggagaggagtcttttggttactaaaagcaatgtactctcacacgttaaatgggcttatcagaca |
32248035 |
T |
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| Q |
215 |
ga |
216 |
Q |
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|| |
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| T |
32248036 |
ga |
32248037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 37790072 - 37789994
Alignment:
| Q |
130 |
gtcgtttgagtgtaatgtgtgggagaggagtcttttggttactaaaagcaatgcactctcacacgttaaatgggcttat |
208 |
Q |
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||||||| || ||||||||||||||| |||| |||||||| | |||||| | || | ||||||||| ||||||||||| |
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| T |
37790072 |
gtcgtttaagcgtaatgtgtgggagatgagttgtttggttattgaaagcagttcattttcacacgtttaatgggcttat |
37789994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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