View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_279 (Length: 246)
Name: NF10865A_low_279
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_279 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8705419 - 8705652
Alignment:
| Q |
1 |
gttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatttgag |
100 |
Q |
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| T |
8705419 |
gttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacaataaaggctttaaatgagtttatttgag |
8705518 |
T |
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| Q |
101 |
tttttatttattcatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctgattggctgttctgtaatttgatgtttatt |
200 |
Q |
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| T |
8705519 |
tttttatttatttatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctgattggctgttctgtaatttgatgtttatt |
8705618 |
T |
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| Q |
201 |
ggattcattgtttgaaattttgaactttgaaccc |
234 |
Q |
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| T |
8705619 |
ggattcattgtttgaaattttgaactttgaaccc |
8705652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 14372308 - 14372181
Alignment:
| Q |
1 |
gttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatttgag |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
14372308 |
gttaaaagcagccgggtgattcatgaatatcatgataccacctttgaagat-accaggtttgttttgttacaataaaggttttaaatgagtttatttgag |
14372210 |
T |
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| Q |
101 |
tttttatttattcatttaaatgagtatga |
129 |
Q |
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| T |
14372209 |
ttattatttatttatttaaatgagtatga |
14372181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8691139 - 8691210
Alignment:
| Q |
1 |
gttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttaca |
72 |
Q |
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| T |
8691139 |
gttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttaca |
8691210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 8724029 - 8724105
Alignment:
| Q |
147 |
caggatttaataattttcctctctgattggctgttctgtaatttgatgtttattggattcattgtttgaaattttga |
223 |
Q |
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|||||||| ||| |||| | |||||| |||||||||| ||||||| | | |||||||||||| ||||||| ||||| |
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| T |
8724029 |
caggatttgatatatttcttatctgataggctgttctgaaatttgaagatgattggattcattctttgaaaatttga |
8724105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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