View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_283 (Length: 246)
Name: NF10865A_low_283
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_283 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 38483881 - 38483683
Alignment:
| Q |
25 |
atcattccaaccaacaataatcgccacttgaagaaacaaaaccaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccattca |
124 |
Q |
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| T |
38483881 |
atcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttca |
38483782 |
T |
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| Q |
125 |
acaaaacctgtcttcgcaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatac |
223 |
Q |
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| T |
38483781 |
acaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatac |
38483683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 30118257 - 30118194
Alignment:
| Q |
51 |
cttgaagaaacaaaaccaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacga |
114 |
Q |
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||||||||||||| |||||||| | ||||||||| |||||||||| ||||| |||||||||||| |
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| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacga |
30118194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 30118138 - 30118073
Alignment:
| Q |
158 |
aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatac |
223 |
Q |
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|||||| ||||||| | |||| ||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
30118138 |
aaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaatac |
30118073 |
T |
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