View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_289 (Length: 245)
Name: NF10865A_low_289
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_289 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 79200 - 78985
Alignment:
| Q |
20 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgagttccaagttgagcccatgttatgacttcaagaagttcctc |
119 |
Q |
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| T |
79200 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
79101 |
T |
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| Q |
120 |
tagagttccatatccacctgcataagttaattcagaaaatttaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
219 |
Q |
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| T |
79100 |
cagagttccatatccccctgcataagttaattcagaaaattcaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
79001 |
T |
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| Q |
220 |
gttttttaggtctatg |
235 |
Q |
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| T |
79000 |
gttttttaggtctatg |
78985 |
T |
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Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 40887084 - 40887299
Alignment:
| Q |
20 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgagttccaagttgagcccatgttatgacttcaagaagttcctc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40887084 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
40887183 |
T |
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| Q |
120 |
tagagttccatatccacctgcataagttaattcagaaaatttaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
219 |
Q |
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| T |
40887184 |
cagagttccatatccccctgcataagttaattcagaaaattcaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
40887283 |
T |
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| Q |
220 |
gttttttaggtctatg |
235 |
Q |
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| T |
40887284 |
gttttttaggtctatg |
40887299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 28269615 - 28269696
Alignment:
| Q |
61 |
attaccggcttgtcatgagttccaagttgagcccatgttatgacttcaagaagttcctctagagttccatatccacctgcat |
142 |
Q |
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| T |
28269615 |
attaccggtttgtcgtgaatcccaagttgagcccaggttatgacttcaagaagctcctctagagtcccataaccacctgcat |
28269696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 21627889 - 21627833
Alignment:
| Q |
82 |
ccaagttgagcccatgttatgacttcaagaagttcctctagagttccatatccacct |
138 |
Q |
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| T |
21627889 |
ccaagctgagcccaagttatgacctcaagaagttcctcaagtgtcccatagccacct |
21627833 |
T |
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