View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_291 (Length: 245)
Name: NF10865A_low_291
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_291 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 40971443 - 40971661
Alignment:
| Q |
19 |
atacatatttatgtttataatcttgcaattaattattcatatttgttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40971443 |
atacatatttatgtttataatcttgcaattaattattcatattttttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaatc |
40971542 |
T |
|
| Q |
119 |
aaatctactcgacacttttaatatagctatcagaacttatacaaccaaattagtttgctgcatagaataacatgtttttcgttctttattaatttgacct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40971543 |
aaatctactcgacacttttaatatagctatcagaacttatacaaccaaattagtttgctgcatagaataacatgtttttcgttctttattaatttgacct |
40971642 |
T |
|
| Q |
219 |
agcaccttggatatttttc |
237 |
Q |
| |
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|| || ||||||||||||| |
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| T |
40971643 |
agtactttggatatttttc |
40971661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 14268893 - 14269008
Alignment:
| Q |
26 |
tttatgtttataatcttgcaattaattattca---tatttgttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaatcaaat |
122 |
Q |
| |
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|||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||||| | || | ||| |||||||||||||| |
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| T |
14268893 |
tttatgtttataatattacaattaattatttaatatatttgttacaggatattaaatcaatttgaagatcatttggatgccttgaaggattcaatcaaga |
14268992 |
T |
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| Q |
123 |
ctactcgacactttta |
138 |
Q |
| |
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|| ||||||||||||| |
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| T |
14268993 |
ctgctcgacactttta |
14269008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 40962279 - 40962470
Alignment:
| Q |
23 |
atatttatgtttataatcttgcaattaattattca-tatttgttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaatcaaa |
121 |
Q |
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|||||||| ||||||||||| ||||||||| |||| ||||||||||||||||| || ||||||||||||| | | || |||||||||||||||||||| |
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| T |
40962279 |
atatttatatttataatcttacaattaatttttcaatatttgttacaggatatcaattcaatttgaagattacttggatgtcttcaaggattcaatcaag |
40962378 |
T |
|
| Q |
122 |
tctactcgacacttttaatatagctatcagaacttatacaaccaaattagtttgctgcatagaataacatgtttttcgttctttattaatttgac |
216 |
Q |
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|| || ||||| ||||| ||| |||| || ||||| ||||||| ||||| ||||||| ||||||||||| ||||| ||||||| |||| |
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| T |
40962379 |
attattccacactcttaatctagtaatcaaaatttatagccccaaattggtttgttgcatag---aacatgttttttgttctctattaatgtgac |
40962470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 40983465 - 40983559
Alignment:
| Q |
23 |
atatttatgtttataatcttgcaattaattattca-tatttgttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaat |
117 |
Q |
| |
|
|||||||| ||||||||||| | ||| |||||||| |||| ||||||||||||||| |||||||||||||||| | || ||||||||||||||||| |
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| T |
40983465 |
atatttatttttataatcttacgatttattattcaatattcgttacaggatattaattcaatttgaagatcat-ttgaagtcttcaaggattcaat |
40983559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 20460911 - 20460777
Alignment:
| Q |
25 |
atttatgtttataatcttgcaattaattattcat-atttgttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaatcaaatc |
123 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| | || | |||||||||||||||||| | |
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| T |
20460911 |
atttatgcttatattcttaaaattaattattcaacatttgttacaggatattaattcaatttgaagatcatttggatgccttcaaggattcaatcaagac |
20460812 |
T |
|
| Q |
124 |
tactcgacacttttaatatagctatcagaacttat |
158 |
Q |
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||||||||||||||||| ||| ||| | ||||||| |
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|
| T |
20460811 |
tactcgacacttttaatctagttatgaaaacttat |
20460777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 20277631 - 20277539
Alignment:
| Q |
25 |
atttatgtttataatcttgcaattaattattca-tatttgttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaat |
117 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||| ||||||||||| | || | ||||||||||||||| |
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|
| T |
20277631 |
atttatatttataatcttaaaattaattattcaatatttgttacaggatattaattcaa-ttgaagatcatatggatgccttcaaggattcaat |
20277539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 20438715 - 20438581
Alignment:
| Q |
25 |
atttatgtttataatcttgcaattaattattc-atatttgttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaatcaaatc |
123 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| |||||| |||||||||||||| ||| ||||||||||| | || | ||| |||||||| |||| | |
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| T |
20438715 |
atttatatttataatcttaaaattaattattcaatatttattacaggatattaatgcaa-ttgaagatcatatggatgcctttgaggattcagtcaagac |
20438617 |
T |
|
| Q |
124 |
tactcgacacttttaatatagctatcagaacttata |
159 |
Q |
| |
|
||||| |||||||||| ||| ||||| |||||||| |
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|
| T |
20438616 |
cactcggcacttttaatctagttatcaaaacttata |
20438581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 20442555 - 20442486
Alignment:
| Q |
25 |
atttatgtttataatcttgcaattaattattca-tatttgttacaggatattaaatcaatttgaagatcat |
94 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||| ||||||||||| |
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| T |
20442555 |
atttatgtttataattttaaaattaattattcaatatttgttacaggatattaattcaa-ttgaagatcat |
20442486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 20430124 - 20430055
Alignment:
| Q |
25 |
atttatgtttataatcttgcaattaattattca-tatttgttacaggatattaaatcaatttgaagatcat |
94 |
Q |
| |
|
||||||||||||| |||| || |||||||||| |||||||||||||||||||| |||| ||||||||||| |
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|
| T |
20430124 |
atttatgtttatagtcttaaaaataattattcaatatttgttacaggatattaattcaa-ttgaagatcat |
20430055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 45486192 - 45486307
Alignment:
| Q |
26 |
tttatgtttataatcttgcaattaattattca---tatttgttacaggatattaaatcaatttgaagatcatgtcgacgtcttcaaggattcaatcaaat |
122 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| | || | ||| |||||||||||||| |
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|
| T |
45486192 |
tttatgtttataatattacaattaattattcaatatatttgttacaggatattaaatcaatttgaagatcatttggatgccttgaaggattcaatcaaga |
45486291 |
T |
|
| Q |
123 |
ctactcgacactttta |
138 |
Q |
| |
|
|| || |||||||||| |
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|
| T |
45486292 |
ctgctggacactttta |
45486307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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