View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_296 (Length: 244)
Name: NF10865A_low_296
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_296 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25884245 - 25884467
Alignment:
| Q |
1 |
cagctctagctagttgcacacgttgtttctggcctccactgaggttaataccgcgttctccaatctcggttccgtcaccatcttccatcatttcaagatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25884245 |
cagctctagctagttgcacacgttgtttctggcctccactgaggttaataccgcgttctccaatctcggttccatcaccatcttccatcatttcaagatc |
25884344 |
T |
|
| Q |
101 |
cttttcaaggcagcacacccttaaagcttccctgtacttgtccaagttcattggtaaaccgaacaatatgttttctttgatggttgcattctgaatccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884345 |
cttttcaaggcagcacacccttaaagcttccctgtacttgtccaagttcattggtaaaccgaacaatatgttttctttgatggttgcattctgaatccat |
25884444 |
T |
|
| Q |
201 |
gatgtttgtgccacgtacgccgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
25884445 |
gatgtttgtgccacgtacgccgt |
25884467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 14319064 - 14319274
Alignment:
| Q |
1 |
cagctctagctagttgcacacgttgtttctggcctccactgaggttaataccgcgttctccaatctcggttccgtcaccatcttccatcatttcaagatc |
100 |
Q |
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|||||||||| ||||| || |||||||||||||| ||||||||||||||||| || ||||||||||| ||| | |||||||||||||||||||||||||| |
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| T |
14319064 |
cagctctagcaagttgtacccgttgtttctggccaccactgaggttaatacctcgctctccaatctcagtttcatcaccatcttccatcatttcaagatc |
14319163 |
T |
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| Q |
101 |
cttttcaaggcagcacacccttaaagcttccctgtacttgtccaagttcattggtaaaccgaacaatatgttttctttgatggttgcattctgaatccat |
200 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
14319164 |
cttttcaaggcagcacactcttaaagtttccctgtacttttccaagttcattggtaagccaaacaatatgttttctttgatggttgcattctgaatccat |
14319263 |
T |
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| Q |
201 |
gatgtttgtgc |
211 |
Q |
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||||||||||| |
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| T |
14319264 |
gatgtttgtgc |
14319274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 14281232 - 14281442
Alignment:
| Q |
1 |
cagctctagctagttgcacacgttgtttctggcctccactgaggttaataccgcgttctccaatctcggttccgtcaccatcttccatcatttcaagatc |
100 |
Q |
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|||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||| |
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| T |
14281232 |
cagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaatctcagtttcgtcaccatattccatcatttcaagatc |
14281331 |
T |
|
| Q |
101 |
cttttcaaggcagcacacccttaaagcttccctgtacttgtccaagttcattggtaaaccgaacaatatgttttctttgatggttgcattctgaatccat |
200 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14281332 |
cttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaacaatatgttttctttgatggttgcattctgaatccat |
14281431 |
T |
|
| Q |
201 |
gatgtttgtgc |
211 |
Q |
| |
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||||| ||||| |
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| T |
14281432 |
gatgtctgtgc |
14281442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 14302616 - 14302826
Alignment:
| Q |
1 |
cagctctagctagttgcacacgttgtttctggcctccactgaggttaataccgcgttctccaatctcggttccgtcaccatcttccatcatttcaagatc |
100 |
Q |
| |
|
|||||||||| ||||| | || ||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
14302616 |
cagctctagcaagttgtatgcgctgtttctggccgccactgaggttaataccgcgctctccaatctcggtttcgtcaccatcttccatcattacaagatc |
14302715 |
T |
|
| Q |
101 |
cttttcaaggcagcacacccttaaagcttccctgtacttgtccaagttcattggtaaaccgaacaatatgttttctttgatggttgcattctgaatccat |
200 |
Q |
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|||||||||||||||||| |||| ||||||| ||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14302716 |
cttttcaaggcagcacactcttagagcttccttgtacttttccatgttcattggcaaaccaaacaatatgttttctttgatggttgcattctgaatccat |
14302815 |
T |
|
| Q |
201 |
gatgtttgtgc |
211 |
Q |
| |
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||||||||||| |
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| T |
14302816 |
gatgtttgtgc |
14302826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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