View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_299 (Length: 244)
Name: NF10865A_low_299
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_299 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4160029 - 4160258
Alignment:
| Q |
1 |
gatgctttggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaa |
100 |
Q |
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| T |
4160029 |
gatgctttggctagtgattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaa |
4160128 |
T |
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| Q |
101 |
atggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4160129 |
atggaacaactggtaagattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaa |
4160228 |
T |
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| Q |
201 |
tttgacatatgttggtggggacatgttcat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4160229 |
tttgacatatgttggtggggacatgttcat |
4160258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4171973 - 4171744
Alignment:
| Q |
1 |
gatgctttggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaa |
100 |
Q |
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| T |
4171973 |
gatgctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaa |
4171874 |
T |
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| Q |
101 |
atggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaa |
200 |
Q |
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| T |
4171873 |
atggaacaactggtaagattatttgtgagacatatcctaagttgagatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaa |
4171774 |
T |
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| Q |
201 |
tttgacatatgttggtggggacatgttcat |
230 |
Q |
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| T |
4171773 |
tttgacatatgtcggtggggacatgttcat |
4171744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 4177589 - 4177368
Alignment:
| Q |
8 |
tggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaac |
107 |
Q |
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| T |
4177589 |
tggctagtgattctaaattgataaacttggcattgagagattgtgattttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatggaac |
4177490 |
T |
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| Q |
108 |
aactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgaca |
207 |
Q |
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| T |
4177489 |
cactggtaaaattatttgtgagacttttcctaagttgaaatgtattgtgtttgataggccacaagttgtagagaacttatctggaagcaataatttgact |
4177390 |
T |
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| Q |
208 |
tatgttggtggggacatgttca |
229 |
Q |
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|||||||||||||||||||||| |
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| T |
4177389 |
tatgttggtggggacatgttca |
4177368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 34343525 - 34343695
Alignment:
| Q |
8 |
tggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaac |
107 |
Q |
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||||||||||||| ||||| | |||||||| ||||| |||||| | ||||||||| ||| | || || |||||||||||||||||||||| |||||| |
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| T |
34343525 |
tggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactggaac |
34343624 |
T |
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| Q |
108 |
aactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtag |
178 |
Q |
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| T |
34343625 |
cacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 34330971 - 34331071
Alignment:
| Q |
61 |
tttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttg |
160 |
Q |
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||||||||| | ||||| ||||||||||||||||||||||||||||| || | ||| ||||| |||||| | ||| ||||| | |||||| ||||||||| |
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| T |
34330971 |
tttgaggggatagaatctattgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttg |
34331070 |
T |
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| Q |
161 |
a |
161 |
Q |
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| T |
34331071 |
a |
34331071 |
T |
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