View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_3 (Length: 569)
Name: NF10865A_low_3
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_3 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 46844953 - 46844530
Alignment:
| Q |
13 |
aatatctcagcattttaattcctctcaaaattttgtgcagctaccttagagaggttgagttgagaagcagagagatcaaaatcaagcactttgatataag |
112 |
Q |
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| T |
46844953 |
aatatctcagcattttaattcctctcaaaattttgtgcagctaccttagagaggtcgagttgagaagcagagagatcaaaatcaagcactttgatataag |
46844854 |
T |
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| Q |
113 |
atttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggtggaattatgtcacatactcaatcatcgttagcttc |
212 |
Q |
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| T |
46844853 |
atttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggtggaattatgtcacatactcaatcatccttagcttc |
46844754 |
T |
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| Q |
213 |
caatttaggcatcttttgtgttatataggcatcacgtcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaat |
312 |
Q |
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| T |
46844753 |
caatttaggcatc--ttgtgctatataggcatcacgtcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaat |
46844656 |
T |
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| Q |
313 |
gcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcgttctaattctaatcggacacaaattagcaaatcatacttt |
412 |
Q |
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| T |
46844655 |
gcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcggtctaattctaatcggacacaaattagcaaattatacttt |
46844556 |
T |
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| Q |
413 |
cctttgatgtaataagacagacacgg |
438 |
Q |
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| T |
46844555 |
cctttgatgtaataagacagacacgg |
46844530 |
T |
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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 48929 - 48986
Alignment:
| Q |
249 |
tcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
306 |
Q |
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| T |
48929 |
tcctccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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