View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_303 (Length: 244)
Name: NF10865A_low_303
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_303 |
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| [»] scaffold0149 (1 HSPs) |
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| [»] scaffold2125 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 2506714 - 2506911
Alignment:
| Q |
28 |
atgaaaattcatggcacaaagtattttctccaccctatcggaaggcatttacacattcgacgcacacacctcggttccatacccggggggcacatatgtg |
127 |
Q |
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| T |
2506714 |
atgaaaattcatggcacaaagtattttctccaccctatcggaaggcatttacacattcgacgcacacacctcggttccataccgggggggcacatatgtg |
2506813 |
T |
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| Q |
128 |
gtggacaatcagaatcagtaacacatagataaccccctgtaatatagaaagagaataaaaagtgtaactaaaatggaatattatattatgtgcgaagt |
225 |
Q |
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| T |
2506814 |
gtggacaatgagaatcagtaacacatagataaccccctgaaatatagaaagagaataaaaagtgtaactaaaatggaatattatattatgtgcgaagt |
2506911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 3400742 - 3400779
Alignment:
| Q |
177 |
agagaataaaaagtgtaactaaaatggaatattatatt |
214 |
Q |
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| T |
3400742 |
agagaataaaaagtgtaactaaaatgggataatatatt |
3400779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 25906 - 25774
Alignment:
| Q |
87 |
acgcacacacctcggttccatacccggggggcacatatgtggtggacaatcagaatcagtaacacatagataaccccctgt-aatatagaaagagaataa |
185 |
Q |
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| T |
25906 |
acgcacacactttggttccattccaggggggcacatatttggtggacaatcagaatcagtagtacatcgataacctcctgtaaaaaaaaaaaaagaataa |
25807 |
T |
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| Q |
186 |
aaagtgtaactaaaatggaatattatattatgt |
218 |
Q |
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| T |
25806 |
aatgtgtaactaaaatgagataatatattatgt |
25774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 22931361 - 22931495
Alignment:
| Q |
93 |
acacctcggttccatacccggggggcacatatgtggtggacaatcagaatcagtaacacatagataaccccctgtaatatagaa--agagaataaaaagt |
190 |
Q |
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| T |
22931361 |
acacctcggttccatatcaggggtgcacatattttgtggacaatcagaatcagtattacatggataataccttgtcacaaaaaaagagagaataaaaagt |
22931460 |
T |
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| Q |
191 |
gtaactaaaatggaatattatattatgtgcgaagt |
225 |
Q |
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| T |
22931461 |
gtaactaaaatgggataatatattgtgtgggaagt |
22931495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 24061375 - 24061239
Alignment:
| Q |
87 |
acgcacacacctcggttccatacccggggggcacatatgtggtggacaatcagaatcagtaacacatagataaccccctgtaata---tagaaa--gaga |
181 |
Q |
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| T |
24061375 |
acgcacacactttggtgtcataccaggagggcacatatttggtggacaaaaagaatcagtagaacatcgatgacctcctgtaataaaataaaaaatgaga |
24061276 |
T |
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| Q |
182 |
ataaaaagtgtaactaaaatggaatattatattatgt |
218 |
Q |
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| T |
24061275 |
ataaaaagtgtaactaaaatgggataatatattatgt |
24061239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2125 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold2125
Description:
Target: scaffold2125; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 477 - 438
Alignment:
| Q |
175 |
aaagagaataaaaagtgtaactaaaatggaatattatatt |
214 |
Q |
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|||||||||||||| |||||||||||||||||| |||||| |
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| T |
477 |
aaagagaataaaaaatgtaactaaaatggaataatatatt |
438 |
T |
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