View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_309 (Length: 243)
Name: NF10865A_low_309
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_309 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 54793816 - 54793599
Alignment:
| Q |
15 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793816 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54793717 |
T |
|
| Q |
115 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcatgcagacttgcacaaaaaccttctca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
54793716 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaacaaatcttttcttgcagacttgcacaaaaaccttctca |
54793617 |
T |
|
| Q |
215 |
tcaaggtctcccattctt |
232 |
Q |
| |
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|||||||||||||||||| |
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| T |
54793616 |
tcaaggtctcccattctt |
54793599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 52286496 - 52286280
Alignment:
| Q |
16 |
gcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttc |
115 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| ||| |
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| T |
52286496 |
gcataactactgcaaaaacacagagcatgtctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttc |
52286397 |
T |
|
| Q |
116 |
acattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcatgcagacttgcacaaaaaccttctcat |
215 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||| |||| || |
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| T |
52286396 |
acattctcctgccaaaaagagcaaagctccatggccttcatcccagcttcttcttcagaaagaaatcttttcttgcagacattcacaaaaactttctgat |
52286297 |
T |
|
| Q |
216 |
caaggtctcccattctt |
232 |
Q |
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||||||||||||||||| |
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| T |
52286296 |
caaggtctcccattctt |
52286280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 54775823 - 54775932
Alignment:
| Q |
15 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775823 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54775922 |
T |
|
| Q |
115 |
cacattctcc |
124 |
Q |
| |
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||||| |||| |
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| T |
54775923 |
cacatgctcc |
54775932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 801656 - 801450
Alignment:
| Q |
19 |
tagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcaca |
118 |
Q |
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|||| ||| ||||||||||||||||| ||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || |||||| |
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| T |
801656 |
tagccactccaaaaacacagagcatggctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcaca |
801557 |
T |
|
| Q |
119 |
ttctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcatgcagacttgcacaaaaaccttctcatcaa |
218 |
Q |
| |
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|| |||||||| | |||||||||||| | |||||| ||||||||||| || |||| |||||||||| ||||| | | |||||||||||||| |||| |
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| T |
801556 |
ttttcctgccataaagagcaaagctcaacggcctttatcccagcttcatc---agaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaa |
801460 |
T |
|
| Q |
219 |
ggtctcccat |
228 |
Q |
| |
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|||||||||| |
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|
| T |
801459 |
ggtctcccat |
801450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 54775950 - 54775982
Alignment:
| Q |
200 |
acaaaaaccttctcatcaaggtctcccattctt |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattctt |
54775982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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